View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11253_high_2 (Length: 1297)
Name: NF11253_high_2
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 1129; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1129; E-Value: 0
Query Start/End: Original strand, 1 - 1207
Target Start/End: Complemental strand, 39127290 - 39126085
Alignment:
| Q |
1 |
aagacatgaacatcaattgaatcttcttccaagttaagctctgtgtttgccaagatcatagcagtactacttgcttcattcacaacttgacccttttctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39127290 |
aagacatgaacatcaattgaatcttcttccaagttaagctctgtgtttgccaagatcatagcagtactacttgcttcattcacaacttgacccttttctg |
39127191 |
T |
|
| Q |
101 |
atcttccattgacacctcaatcgcatatgaccgttttgccttgaaatttgacctttggaagagagtattgaggcaaattgactctcactatctccaccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39127190 |
atcttccattgacacctcaatcgcatatgaccgttttgccttgaaatttgacctttggaagagagtattgaggcaaattgactctcactatctccaccac |
39127091 |
T |
|
| Q |
201 |
ttaggtaaaccggctcaagttctttgccattgcttgctattatgtttacaagatacatggattctccatagagaacttgtccattatccatgttctgatg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39127090 |
ttaggtaaaccggctcaagttctttgccattgcttgctataatgtttacaagatacatggattctccatagagaacttgtccattatccatgttctgatg |
39126991 |
T |
|
| Q |
301 |
agtggtaagattgagatttggtgctttggtaactatcttggtcgtattcaacaacagagaccctgtcgttctttgataaattgtgtttgcggcttgttat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39126990 |
agtggtaagattgagatttggtgctttggtaactatcttggtcgtattcaacaacagagaccctgtcgttctttgctaaattgtgtttgcggcttgttat |
39126891 |
T |
|
| Q |
401 |
tgatttggagtggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaactcaaagctaaaacattcaccattgttgcttgggaatgggaatgtcc |
500 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39126890 |
tgatttggggtggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaactcaaagctaaaacattcaccattgttgcttgggaatgggagtgtcc |
39126791 |
T |
|
| Q |
501 |
tgtcaagtgtgctggcactggcaccaatagtggtatccaggagccattgtttccagacagaacttgcaccaatagttgtatcaccagtaatgtatcagta |
600 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
39126790 |
tgtcaagtgtgctggcac------caatagtggtatccaggagccattgtttccagacagaacttgcaccaatagtggtaccaccagtaatgtatcagta |
39126697 |
T |
|
| Q |
601 |
agagatgcctaatacatgctgctagtaacagtatattacaatattgactgaattctagcccaggaaatgctgcaaaaattgtgaaacggaaaaaggacga |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39126696 |
agagatgcctaatacatgctgctagtaacagtatattacaatattgactgaattctagcccaggaaatgctgcaaaaattgtgaaatggaaaaaggacga |
39126597 |
T |
|
| Q |
701 |
tctaagaagttggatgaaagttacaaacagcagaaagactttccaacagattcaccgaagaaatgttatgtgagaaactgtaatgtgtgtattataatca |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39126596 |
tctaagaagttggatgaaagttacaaacagcagaaagactttccaacagattcaccgaagaaatgttatgtgagaaactgtaatgtgtgtattataatca |
39126497 |
T |
|
| Q |
801 |
aaactaggccattagctgattcagtgataatttattagtgataagctgattaa-----tcattgtccagaaattgctaccgttgatcattaatgcagcat |
895 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39126496 |
aaactaggccattagctgattcagtgataattcattagtgataagctgattaagtacatcattgtccagaaattgctaccgttgatcattaatgcagcat |
39126397 |
T |
|
| Q |
896 |
gccaaatgtcttgaatatattttgagcaattgaataatatttatgatttattggtttgtaaaaaatcattctaaacttacaatgttcacggaaaagtttt |
995 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39126396 |
gccaaatgtcttgaatatattttgagcaattgaataatatttatgatttattggtttgtaaaaaatcattctaaacttacaatgttcacggaaaagtttt |
39126297 |
T |
|
| Q |
996 |
ttataagtggttaaaaaattgagatctcaaagttaatttaaattgacatggaaaattcataattactgtgaataaaattatcttttgccaaataattatt |
1095 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
39126296 |
ttataagtggttaaaaaattgagatctcaaagttaatttaaattgacatggaaaattcataattactgtgaataaaattatctttttccaaataattatt |
39126197 |
T |
|
| Q |
1096 |
gtgaaggtttttaagacttttagatattctaaaaatattgatgatgggtacgtagatcaaaaatcacatcctaattgacatcaaatatcctccggctatt |
1195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39126196 |
gtgaaggtttttaagacttttagatattctaaaaatattgatgatgggtacgtagatcaaaaatcacatcctaattgacatcaaatatcctccggctctt |
39126097 |
T |
|
| Q |
1196 |
ccactttttaaa |
1207 |
Q |
| |
|
|||||||||||| |
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|
| T |
39126096 |
ccactttttaaa |
39126085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 39480135 - 39480428
Alignment:
| Q |
1 |
aagacatgaacatcaattgaatcttcttccaagttaagctctgtgtttgccaagatcatagcagtactacttgcttcattcacaacttgacccttttctg |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || || |||||| |||||| ||||||||||||||| |
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|
| T |
39480135 |
aagagatgaacatcaaccgaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccacctgcttccttcacagcttgacccttttctg |
39480234 |
T |
|
| Q |
101 |
atcttccattgacacctcaatcgcatatgaccgttttgccttgaaatttgacctttggaagaga-gtattgaggc-aaattgactctcactatctccacc |
198 |
Q |
| |
|
||||||| |||||||||| ||| |||| ||| |||| ||||||| |||| ||||||||||||| ||||||| |||||||||||||||||| ||||| |
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|
| T |
39480235 |
atcttccgttgacacctcgatcacataccaccatttttccttgaactttgtcctttggaagagaccctttgaggcaaaattgactctcactatccccacc |
39480334 |
T |
|
| Q |
199 |
acttaggtaaaccggctcaagttctttgccattgcttgctattatgtttacaagatacatggattctccatagagaacttgtccattatccatg |
292 |
Q |
| |
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| ||||||||| ||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39480335 |
agagaggtaaaccagctcaagttctttgctattgcttgctattctgttcaccggatacatggattctccatagagaacttgtccattacccatg |
39480428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 34705155 - 34705210
Alignment:
| Q |
411 |
tggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaactcaaagctaaaa |
466 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
34705155 |
tggagagaaaatgcttgctgctgtgagtgaagttactaacaggctcaaagctaaaa |
34705210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 11593123 - 11593176
Alignment:
| Q |
304 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
356 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||| || |||||||||||| |
|
|
| T |
11593123 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
11593176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 11644996 - 11644943
Alignment:
| Q |
304 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
356 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||| || |||||||||||| |
|
|
| T |
11644996 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
11644943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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