View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11253_high_4 (Length: 495)
Name: NF11253_high_4
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 20 - 482
Target Start/End: Complemental strand, 32085111 - 32084649
Alignment:
| Q |
20 |
gatgggaagcaaatatgataagacatggactggaagcaaagagtaaggtcagacacaagagaggccaaatgagatgcctaaaagaaagatcatgactcca |
119 |
Q |
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| T |
32085111 |
gatggaaagcaaatatgataagacatagactggaagcaaagagtaaggccagacacaagagaggccacatgagatgcctaaaagaaagatcatgtctcca |
32085012 |
T |
|
| Q |
120 |
aagtactttagggattatgtcaaatcatctataagaaagccacacctttgcatttcctaatatattgatgtgattccagcattttcaaatcaagcaagac |
219 |
Q |
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| T |
32085011 |
aagtactttagggattatgtcaaatcatctataagaaagccacacctttgcatttcctaatatattgatgtgattccagcattttcaaatcaagcaagac |
32084912 |
T |
|
| Q |
220 |
ttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatttactcagttcctaatacttcggtattttcatcgagct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32084911 |
ttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatttactcagttcctaatactttggtattttcatcgagct |
32084812 |
T |
|
| Q |
320 |
aatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagccgttagcaaactcactaccaatcaatccacccttggtgaaacccaaactc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084811 |
aatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagccattagcaaactcactaccaatcaatccacccttggtgaaacccaaactc |
32084712 |
T |
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| Q |
420 |
ttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaatacccattccct |
482 |
Q |
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|||| ||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |
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| T |
32084711 |
ttacggcctccaaaattgacgacattctccacaaattagcgtcccttgaaatacccattccct |
32084649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 183 - 476
Target Start/End: Complemental strand, 32086411 - 32086120
Alignment:
| Q |
183 |
attgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatt |
282 |
Q |
| |
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||||| || ||||||||||||| |||||||| |||| | |||| ||||||||| |||||||||||||||||| ||| ||| | |||| ||||||| |
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| T |
32086411 |
attgaagtaattccagcattttgaaatcaagaaagaatctaaatttcattatctttttccttcttaggaggttgc--tagtccttgaactattgcaaatt |
32086314 |
T |
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| Q |
283 |
tactcagttcctaatacttcggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagccgttagcaaactc |
382 |
Q |
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||| |||||||||| |||| ||| ||||||||| ||||||| ||||||| |||| ||| |||| || ||||||||||||||||| ||||||||||| |
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| T |
32086313 |
tacccagttcctaacactttggtgttttcatcgggctaatccaaaaactacatgttcgaaagccacagccgataaaatggaagaagccattagcaaactc |
32086214 |
T |
|
| Q |
383 |
actaccaatcaatccacccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaataccca |
476 |
Q |
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| T |
32086213 |
attactgatcaatttacccttgttgaaatccaaactctcccggcctccctaattgatgacattctccacaagttagcctcccttgacataccca |
32086120 |
T |
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