View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11253_high_6 (Length: 484)
Name: NF11253_high_6
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_high_6 |
 | |
|
| [»] scaffold1195 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 15489616 - 15489878
Alignment:
| Q |
16 |
caatattagtatgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaata |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||| |
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|
| T |
15489616 |
caatattactatgagatgaaaagctgaatgggggagcgcgatagaaacatcattatcatgaaaaattgaagatagagcacaaa-gcgaggaaatttaata |
15489714 |
T |
|
| Q |
116 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15489715 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtat |
15489814 |
T |
|
| Q |
216 |
taactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattgtaaaat |
279 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15489815 |
taactgattgttatatgaatattatgcatgagttcattcaatattgaaatcaatattgtaaaat |
15489878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 15557657 - 15557919
Alignment:
| Q |
16 |
caatattagtatgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaata |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||| |
|
|
| T |
15557657 |
caatattactatgagatgaaaagctgaatgggggagcgcgatagaaacatcattatcatgaaaaattgaagatagagcacaaa-gcgaggaaatttaata |
15557755 |
T |
|
| Q |
116 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15557756 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtat |
15557855 |
T |
|
| Q |
216 |
taactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattgtaaaat |
279 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15557856 |
taactgattgttatatgaatattatgcatgagttcattcaatattgaaatcaatattgtaaaat |
15557919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 275 - 468
Target Start/End: Original strand, 15431970 - 15432163
Alignment:
| Q |
275 |
aaaatcagatgatacctgagtattgttaaataataaatagtagttgtagcgtcgtgtcaccattgcattgcagaatttacacaaatcattggttttttgc |
374 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15431970 |
aaaatcagatgatacctgaatattgttaaataataaatagtagttgcagcggcgtgtcaccattgcattgcagaatttacacaaatcattgtttttttgc |
15432069 |
T |
|
| Q |
375 |
gatgctttatttagcacaaagtattacgaaatagcggctatagtggtgctaaagcactcttgcacagcagaattttatcaaaccacttttcaca |
468 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
15432070 |
gatactttatttagcacaaagtattacgaaatagcggctatagtggtgctaaagcaatcttgcacagcagaattttatcaaaccacttttcaca |
15432163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 15431230 - 15431418
Alignment:
| Q |
25 |
tatgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaataagaatttgc |
124 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
15431230 |
tatgagattaaaagctgaatgggggagcgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaaatttcttaagaatttgc |
15431329 |
T |
|
| Q |
125 |
ggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15431330 |
ggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgt |
15431418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 275 - 468
Target Start/End: Original strand, 15490325 - 15490518
Alignment:
| Q |
275 |
aaaatcagatgatacctgagtattgttaaataataaatagtagttgtagcgtcgtgtcaccattgcattgcagaatttacacaaatcattggttttttgc |
374 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
15490325 |
aaaatcagataatacctgagtattgttaaataataaatagtagctgtagcggcgtgtcaccattgcattccagaatttacacaaatcattgtttttttgc |
15490424 |
T |
|
| Q |
375 |
gatgctttatttagcacaaagtattacgaaatagcggctatagtggtgctaaagcactcttgcacagcagaattttatcaaaccacttttcaca |
468 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15490425 |
gatactttatttagcacaaagtattacgaaatagcggctatagtggtgctacagcattcttgcacggcagaattttatcaaaccacttttcaca |
15490518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 116 - 279
Target Start/End: Original strand, 15450827 - 15450990
Alignment:
| Q |
116 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
15450827 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactggaatgagaacattatat |
15450926 |
T |
|
| Q |
216 |
taactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattgtaaaat |
279 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15450927 |
taactgattgttatatgaatattatgcatgagttcattcagtattgaaatcaatattgtaaaat |
15450990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 16944265 - 16944452
Alignment:
| Q |
86 |
gatagagcacaaaagagaggaattttaataagaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggat |
185 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16944265 |
gatagagcacaaaagcgaggaaatttaataagaatttgcagaagaaaatacagattttagaaaaactctcaattaataaggtcaaataatgaaaatggat |
16944364 |
T |
|
| Q |
186 |
gaattatgcactagaatgagaacattgtattaactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattg |
273 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
16944365 |
gaattgtgtactagaatgagaacattgtactaactgattgttatatgaatattatgcatgagttcattaagtattgaaatcaaaattg |
16944452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 117 - 273
Target Start/End: Original strand, 15431419 - 15431575
Alignment:
| Q |
117 |
gaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15431419 |
gaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgtatt |
15431518 |
T |
|
| Q |
217 |
aactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattg |
273 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
15431519 |
aacgttttgttatatgaatattatgcatgagttcattcagtattgtaataaatattg |
15431575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 15450681 - 15450765
Alignment:
| Q |
16 |
caatattagtatgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaag |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15450681 |
caatattactatgagatgaaaagctgaataggggagcgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaag |
15450765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 15534703 - 15534805
Alignment:
| Q |
118 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
217 |
Q |
| |
|
||||||| |||||||| ||| ||| ||| ||||||||||||||| |||||| ||| ||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
15534703 |
aatttgcagaagaaaacacaaattttaggaaaactctcaattaacaaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
15534802 |
T |
|
| Q |
218 |
act |
220 |
Q |
| |
|
||| |
|
|
| T |
15534803 |
act |
15534805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 16944977 - 16945027
Alignment:
| Q |
275 |
aaaatcagatgatacctgagtattgttaaataataaatagtagttgtagcg |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16944977 |
aaaatcagatgatacctgagtattgttaaataataaatactagttgtagcg |
16945027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 15480942 - 15480846
Alignment:
| Q |
118 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgta |
214 |
Q |
| |
|
||||||| ||||||||||| | | ||| ||||||||||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
15480942 |
aatttgcaaaagaaaatacaaaatttaggaaaactctcaattaacgaggtcgaatgatgaaaatggatggattatgcacttaaatgagaacattgta |
15480846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 15427852 - 15427954
Alignment:
| Q |
118 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
217 |
Q |
| |
|
||||||| ||||||| | | ||| ||| ||||||||||||||| ||||| ||| ||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
15427852 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtccaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
15427951 |
T |
|
| Q |
218 |
act |
220 |
Q |
| |
|
||| |
|
|
| T |
15427952 |
act |
15427954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 15483762 - 15483864
Alignment:
| Q |
118 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
217 |
Q |
| |
|
||||||| ||||||| | | ||| ||| ||||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||| ||||||||| || |
|
|
| T |
15483762 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgaaaacattgtagta |
15483861 |
T |
|
| Q |
218 |
act |
220 |
Q |
| |
|
||| |
|
|
| T |
15483862 |
act |
15483864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 15447384 - 15447454
Alignment:
| Q |
150 |
actctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaact |
220 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||| | |||||||||| |||||||||||||||| ||||| |
|
|
| T |
15447384 |
actctcaattaacgaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaact |
15447454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 15558510 - 15558551
Alignment:
| Q |
329 |
tgtcaccattgcattgcagaatttacacaaatcattggtttt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15558510 |
tgtcaccattgcattgcagaatttacacaaatcattgatttt |
15558551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 455
Target Start/End: Original strand, 15512004 - 15512126
Alignment:
| Q |
332 |
caccattgcattgcagaatttacacaaatcattggttttttgcgatgctttatttagcacaaagtattacgaaatagcggctatagtggtgctaaagcac |
431 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | | || |||||| |||||||||| ||||| | ||| | ||| |||| || ||||||| ||||| |
|
|
| T |
15512004 |
caccattgcattgcagaatttaaacaaatcatcgttgttctgcgatactttatttagtacaaaattttatg-aatgacggcaattacggtgctatagcac |
15512102 |
T |
|
| Q |
432 |
tcttgcacagcagaattttatcaa |
455 |
Q |
| |
|
| ||| | |||||||||||||||| |
|
|
| T |
15512103 |
tattggagagcagaattttatcaa |
15512126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 16944226 - 16944270
Alignment:
| Q |
16 |
caatattagtatgagatgaaaagctgaatgggggagtgcgataga |
60 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16944226 |
caatattactatgagatgaaaagctgaatgggggagcacgataga |
16944270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 15450790 - 15450825
Alignment:
| Q |
40 |
tgaatgggggagtgcgatagaaacatcattatcatg |
75 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15450790 |
tgaatgggggagcgcgatagaaacatcattatcatg |
15450825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1195 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1195
Description:
Target: scaffold1195; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 364
Target Start/End: Original strand, 1160 - 1195
Alignment:
| Q |
329 |
tgtcaccattgcattgcagaatttacacaaatcatt |
364 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1160 |
tgtcaccattgcattgcagtatttacacaaatcatt |
1195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 9446306 - 9446346
Alignment:
| Q |
382 |
tatttagcacaaagtattacgaaatagcggctatagtggtg |
422 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
9446306 |
tatttagtacaaaatattatgaaatagcggctatagtggtg |
9446346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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