View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11253_high_8 (Length: 433)
Name: NF11253_high_8
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_high_8 |
 | |
|
| [»] scaffold0092 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 80 - 366
Target Start/End: Complemental strand, 44731116 - 44730806
Alignment:
| Q |
80 |
taaaattacgaggtccgacgccgtagttcaccttgcacttgctaagggccgggcctgctaggaagcaagacaatatagtggcctgtgagttagcaag--- |
176 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44731116 |
taaaattgcgaggtccgacgccgtagctcaccttgcacttgctaagggccgggcctgctaggaagcaagacaatatagtggcctgtgagttagctagggt |
44731017 |
T |
|
| Q |
177 |
------ata------------atgcaatggcccatgagaaattgctttgctttattgcaagagttgtttccaaactcgtcggtataatcttctaggaagc |
258 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44731016 |
gactacatacacaggctgctaatgcaatggcccatgagaaattgctttgctttattgcaagagttgtttccaaactcgtcggtataatcttctaggaagc |
44730917 |
T |
|
| Q |
259 |
aagataatggattgtcccttgagtttaatagtgtaggggattgtagtcttccattgatgatgag---tcagttacaggtgttgtggttctataactatcg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
44730916 |
aagataatggattgtcccttgagtttaatagtgtaggggattgtagtcttccattgatgatgagtcatcagttacaggtggtgtggttctataactatcg |
44730817 |
T |
|
| Q |
356 |
tccgttgatgt |
366 |
Q |
| |
|
||||||||||| |
|
|
| T |
44730816 |
tccgttgatgt |
44730806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 44731242 - 44731202
Alignment:
| Q |
14 |
acatcaagaccaaagacctaagtgcgttctattttactacc |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44731242 |
acatcaagaccaaagacctaagtgcgttctattttactacc |
44731202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 10251080 - 10251047
Alignment:
| Q |
17 |
tcaagaccaaagacctaagtgcgttctattttac |
50 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
10251080 |
tcaagaccaaagacctaagtgcattctattttac |
10251047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 45460 - 45519
Alignment:
| Q |
73 |
aggctcttaaaattacgaggtccgacgccgtagttcaccttgcacttgctaagggccggg |
132 |
Q |
| |
|
|||||||||||||||||||| ||| | | |||| ||||||||||| ||| |||||||||| |
|
|
| T |
45460 |
aggctcttaaaattacgaggcccggcactgtagctcaccttgcacatgccaagggccggg |
45519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 47582375 - 47582438
Alignment:
| Q |
73 |
aggctcttaaaattacgaggtccgacgccgtagttcaccttgcacttgctaagggccgggcctg |
136 |
Q |
| |
|
|||||| ||||||| | ||||||| | |||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
47582375 |
aggctcctaaaattgcaaggtccggcaccgtagctcaccttgcgcttgctaagggtcgggcctg |
47582438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 39921627 - 39921663
Alignment:
| Q |
100 |
ccgtagttcaccttgcacttgctaagggccgggcctg |
136 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39921627 |
ccgtagttcaccttgtgcttgctaagggccgggcctg |
39921663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 12705622 - 12705685
Alignment:
| Q |
73 |
aggctcttaaaattacgaggtccgacgccgtagttcaccttgcacttgctaagggccgggcctg |
136 |
Q |
| |
|
|||||| ||||||| |||| ||| | |||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
12705622 |
aggctcctaaaattgggaggcccgtcaccgtagctcaccttgcacttgctaagggccggacctg |
12705685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 38153915 - 38153980
Alignment:
| Q |
73 |
aggctcttaaaattacgaggtccgacgccgtagttcaccttgcacttgctaagggccgggcctgct |
138 |
Q |
| |
|
|||||| ||| ||||||||| ||| | |||||| ||||||||||| ||| ||||| |||||||||| |
|
|
| T |
38153915 |
aggctcctaagattacgaggcccggcaccgtagctcaccttgcacatgccaagggtcgggcctgct |
38153980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University