View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11253_low_10 (Length: 372)
Name: NF11253_low_10
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 44952139 - 44952367
Alignment:
| Q |
15 |
aagaacacgggaataagagatatgacccacgtcatcgtaagttcctcttgtgcaaatctaatttacaactatatattactgcctctgactacattcaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44952139 |
aagaacacgggaataagagatatgacccacgtcatcgtaagttcctcttgtgcaaagctaatttacaactatatattactgcctctgactacattcaaac |
44952238 |
T |
|
| Q |
115 |
atgccaa---------------tagcaaaatccattttaaaattggaagatgatgtcaagtaattgcaaactaagtagaatattcaaaacagattcatat |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44952239 |
atgccaatgctcacgtaagtattagcaaaatccattttaaaattggaagatgatgtcaagtaattgcaaactaactagaatattcaaaacagattcatat |
44952338 |
T |
|
| Q |
200 |
tttagatgtatgtttgtgattgacatgtc |
228 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |
|
|
| T |
44952339 |
tttagatgtatatttgtcactgacatgtc |
44952367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 225 - 353
Target Start/End: Original strand, 44952421 - 44952549
Alignment:
| Q |
225 |
tgtcataacattgaataatatttgaagggtgcatcacagattcttgcagttgcagcaacaagttgcttatctggtgcatctgcaagtaaattcttgcatc |
324 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44952421 |
tgtcataacatagaataatatttgaagggtgcatcacagattcttgcagttgcagcaacaagttgcttatctggtgcatctgcaagtaaattcttgcatc |
44952520 |
T |
|
| Q |
325 |
aacaatatgtccgtacaaaacattttaag |
353 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44952521 |
aacaatatgtccgtacaaaacattttaag |
44952549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University