View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11253_low_11 (Length: 319)

Name: NF11253_low_11
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11253_low_11
NF11253_low_11
[»] chr5 (3 HSPs)
chr5 (1-301)||(5399835-5400139)
chr5 (103-136)||(38749571-38749604)
chr5 (96-140)||(14818307-14818351)
[»] scaffold0004 (1 HSPs)
scaffold0004 (100-137)||(101015-101052)
[»] chr6 (3 HSPs)
chr6 (103-136)||(17168912-17168945)
chr6 (85-126)||(13815057-13815098)
chr6 (105-145)||(9617454-9617494)
[»] chr7 (2 HSPs)
chr7 (105-145)||(19930940-19930980)
chr7 (103-139)||(30606069-30606105)
[»] chr4 (3 HSPs)
chr4 (96-140)||(32915610-32915654)
chr4 (96-140)||(5555136-5555180)
chr4 (100-140)||(25390890-25390930)
[»] chr8 (2 HSPs)
chr8 (96-143)||(14692470-14692517)
chr8 (100-140)||(18964192-18964232)
[»] chr3 (2 HSPs)
chr3 (86-138)||(41319316-41319369)
chr3 (100-140)||(35222953-35222993)
[»] scaffold0123 (1 HSPs)
scaffold0123 (105-145)||(44524-44564)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 5399835 - 5400139
Alignment:
Q  1 tgaaaaaagagatacatagtaagctatatatataccatcaatcacagattcggatacggacacaagacacgacatatatatgtctgacatcaatgataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5399835 tgaaaaaagagatacatagtaagctatatatataccatcaatcacaaactcggatacggacacaagacacgacatatatatgtctgacatcaataataat 5399934  T
Q  101 ttaaaaaatgacataattcaatgtaactatatgtgtcggtatcgt----atatatgtatatgatactgagacacatataatccgaagagtacgtgtgttt 196  Q
    |||||||||||||||||||||||||| ||||||| || |||||||    |||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  5399935 ttaaaaaatgacataattcaatgtaattatatgtttcagtatcgtgtatatatatatatatgatactgagacacatctaatctgaagagtacgtgtgttt 5400034  T
Q  197 attaggtatatggacatgtctattaatgatcaatcaatacagtagtactactagaactcaattactacgacaataaagaaagtgtatgggttattgcacg 296  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5400035 attaggtatatggacatgtcgattaatgatcaatcaatacagtagtactactagaactcaattacaacgacaataaagaaagtgtatgggttattgcacg 5400134  T
Q  297 tattt 301  Q
    |||||    
T  5400135 tattt 5400139  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 38749604 - 38749571
Alignment:
Q  103 aaaaaatgacataattcaatgtaactatatgtgt 136  Q
    |||||||||||||||||||||||| |||||||||    
T  38749604 aaaaaatgacataattcaatgtaattatatgtgt 38749571  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 14818351 - 14818307
Alignment:
Q  96 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 140  Q
    ||||||| | |||||||||||||||||||||  ||||||||||||    
T  14818351 ataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 14818307  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 101015 - 101052
Alignment:
Q  100 tttaaaaaatgacataattcaatgtaactatatgtgtc 137  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  101015 tttaaaaaatgacataattcaatgtaattatatgtgtc 101052  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 17168912 - 17168945
Alignment:
Q  103 aaaaaatgacataattcaatgtaactatatgtgt 136  Q
    ||||||||||||||||||||||||||||||||||    
T  17168912 aaaaaatgacataattcaatgtaactatatgtgt 17168945  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 13815098 - 13815057
Alignment:
Q  85 tgacatcaatgataatttaaaaaatgacataattcaatgtaa 126  Q
    ||||| |||| ||||||||||||||||||||||| |||||||    
T  13815098 tgacaccaataataatttaaaaaatgacataattgaatgtaa 13815057  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 9617454 - 9617494
Alignment:
Q  105 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 145  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  9617454 aaaatcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 19930980 - 19930940
Alignment:
Q  105 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 145  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  19930980 aaaatgacataattcaatgtaattatatgtgtcgatatcgt 19930940  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 30606105 - 30606069
Alignment:
Q  103 aaaaaatgacataattcaatgtaactatatgtgtcgg 139  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30606105 aaaaaatgacataattcaatgtaaccatatgtgtcgg 30606069  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 32915654 - 32915610
Alignment:
Q  96 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 140  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||    
T  32915654 ataatttaaaaaatcacataattcaatgtaattatatgtttcggt 32915610  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 5555180 - 5555136
Alignment:
Q  96 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 140  Q
    |||||||||||||| | |||||| ||||||| |||||||||||||    
T  5555180 ataatttaaaaaataagataatttaatgtaattatatgtgtcggt 5555136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 25390930 - 25390890
Alignment:
Q  100 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 140  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  25390930 tttagaaaatgacataattcaatataaccatatgtgtcggt 25390890  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 14692470 - 14692517
Alignment:
Q  96 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatc 143  Q
    ||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  14692470 ataatttgagaaatgacataattcagtgtaactataggtgtcggtatc 14692517  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 18964192 - 18964232
Alignment:
Q  100 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 140  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  18964192 tttagaaaatcacataattcaatgtaattatatgtgtcggt 18964232  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 41319369 - 41319316
Alignment:
Q  86 gacatcaatgataattt-aaaaaatgacataattcaatgtaactatatgtgtcg 138  Q
    |||| |||| ||||||| |||||||||||||||||||||||| | |||||||||    
T  41319369 gacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcg 41319316  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 35222953 - 35222993
Alignment:
Q  100 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 140  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  35222953 tttagaaaatcacataattcaatgtaattatatgtgtcggt 35222993  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 44564 - 44524
Alignment:
Q  105 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 145  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  44564 aaaatcacataattcagtgtaattatatgtgtcggtatcgt 44524  T

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