View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11253_low_13 (Length: 298)

Name: NF11253_low_13
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11253_low_13
NF11253_low_13
[»] chr7 (9 HSPs)
chr7 (70-285)||(41867145-41867364)
chr7 (1-60)||(40236919-40236978)
chr7 (3-60)||(31513287-31513344)
chr7 (3-59)||(31408676-31408732)
chr7 (13-60)||(41861674-41861721)
chr7 (14-60)||(27535285-27535331)
chr7 (1-60)||(39998408-39998467)
chr7 (6-60)||(24280642-24280696)
chr7 (1-58)||(10573751-10573808)
[»] chr8 (8 HSPs)
chr8 (1-60)||(35181516-35181575)
chr8 (1-60)||(34304788-34304847)
chr8 (3-60)||(16603669-16603726)
chr8 (16-60)||(19386626-19386670)
chr8 (1-60)||(18066759-18066818)
chr8 (3-59)||(16358876-16358933)
chr8 (1-58)||(33630034-33630091)
chr8 (24-60)||(10678204-10678240)
[»] chr5 (6 HSPs)
chr5 (1-60)||(32473435-32473494)
chr5 (1-60)||(7617133-7617192)
chr5 (3-60)||(17208074-17208131)
chr5 (20-60)||(30622778-30622818)
chr5 (1-60)||(33855084-33855143)
chr5 (13-60)||(41334716-41334763)
[»] chr2 (13 HSPs)
chr2 (1-60)||(43114557-43114616)
chr2 (3-60)||(966877-966934)
chr2 (1-58)||(11825695-11825752)
chr2 (3-60)||(18491705-18491762)
chr2 (1-58)||(41282015-41282072)
chr2 (1-60)||(12415501-12415560)
chr2 (1-60)||(12427561-12427620)
chr2 (1-60)||(16803968-16804027)
chr2 (1-60)||(16843250-16843309)
chr2 (3-58)||(4299463-4299518)
chr2 (1-60)||(16096747-16096806)
chr2 (1-60)||(34895782-34895841)
chr2 (1-58)||(6518510-6518566)
[»] chr1 (12 HSPs)
chr1 (1-60)||(44112677-44112736)
chr1 (3-60)||(14427347-14427404)
chr1 (3-60)||(48119628-48119685)
chr1 (1-60)||(41065153-41065212)
chr1 (3-60)||(35003294-35003351)
chr1 (3-60)||(38113238-38113295)
chr1 (3-60)||(38335918-38335975)
chr1 (1-60)||(45427786-45427845)
chr1 (3-60)||(45639775-45639832)
chr1 (3-60)||(46168383-46168440)
chr1 (3-60)||(45705825-45705882)
chr1 (20-60)||(35000173-35000213)
[»] chr4 (13 HSPs)
chr4 (3-58)||(3756289-3756344)
chr4 (3-60)||(711960-712017)
chr4 (3-60)||(17619195-17619252)
chr4 (3-60)||(32728357-32728414)
chr4 (3-60)||(46827749-46827806)
chr4 (3-60)||(55272419-55272476)
chr4 (13-60)||(960923-960970)
chr4 (1-60)||(48435620-48435679)
chr4 (3-60)||(49229707-49229764)
chr4 (1-60)||(28988473-28988532)
chr4 (3-58)||(35037007-35037062)
chr4 (2-60)||(1771308-1771366)
chr4 (24-60)||(36004168-36004204)
[»] chr3 (8 HSPs)
chr3 (1-60)||(9434124-9434183)
chr3 (3-60)||(10457935-10457992)
chr3 (13-60)||(4190318-4190365)
chr3 (1-60)||(34791829-34791888)
chr3 (3-60)||(51757593-51757650)
chr3 (3-60)||(52628020-52628077)
chr3 (13-60)||(25996268-25996315)
chr3 (13-60)||(36150130-36150177)
[»] chr6 (5 HSPs)
chr6 (1-60)||(31109263-31109322)
chr6 (1-60)||(33253913-33253972)
chr6 (15-58)||(27441544-27441587)
chr6 (3-60)||(33242403-33242460)
chr6 (2-60)||(7273377-7273435)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-60)||(35497-35556)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-58)||(45774-45817)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 70 - 285
Target Start/End: Complemental strand, 41867364 - 41867145
Alignment:
Q  70 tactttcttcaatctttgaatatttgtgattat----atctggattaagacattaatatttatctttatattttgattaagacacgaatatttatatgta 165  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41867364 tactttcttcaatctttgaatatttgtgattatgcatatctggattaagacattaatatttatctttatattttgattaagacacgaatatttatatgta 41867265  T
Q  166 tatttggactaagacatgaatagtatcttatggaatatttggcttaagacatgaatatgaatatttatttattgttatgcttggactaagacatgaatac 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41867264 tatttggactaagacatgaatagtatcttatggaatatttggcttaagacatgaatatgaatatttatttattgttatgcttggactaagacatgaatac 41867165  T
Q  266 ttattaatgttgttattttt 285  Q
    ||||||||||||||||||||    
T  41867164 ttattaatgttgttattttt 41867145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40236978 - 40236919
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  40236978 cctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 31513344 - 31513287
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| ||| || |||||||||||||||||| | ||||||||||||||||||||    
T  31513344 taatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 31408676 - 31408732
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttc 59  Q
    ||||||||| | |||| ||||| |||||||||||| |||||||||||||||||||||    
T  31408676 taatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 41861721 - 41861674
Alignment:
Q  13 ggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  41861721 ggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 27535285 - 27535331
Alignment:
Q  14 gtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  27535285 gtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 27535331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39998467 - 39998408
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| |||| |||||| |||||| |||||||||||   ||||||||||||||||||||    
T  39998467 cctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 24280642 - 24280696
Alignment:
Q  6 tgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| | |||| |||||||||||||| ||| ||||||||| ||||||||||||    
T  24280642 tgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10573808 - 10573751
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    |||||| |||| |||||| |||||| ||||||| ||| ||||||| ||||||||||||    
T  10573808 cctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35181575 - 35181516
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  35181575 cctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35181516  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34304847 - 34304788
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||||    
T  34304847 cctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 16603669 - 16603726
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  16603669 taatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcc 16603726  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 19386626 - 19386670
Alignment:
Q  16 gtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  19386626 gtataatagggtgtatgattaaagggtgttcatgtaacattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18066759 - 18066818
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| |||| | |||| |||||  ||||||||||| ||||||||||||||||||||||    
T  18066759 cctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattttcc 18066818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 16358876 - 16358933
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttc-atgtaacattttc 59  Q
    ||||||||| | |||| |||||||||||||||||| |||| ||| |||||||||||||    
T  16358876 taatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacattttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33630034 - 33630091
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    ||||||||||  |||||| |||  ||||||||||||| |||||||| |||||||||||    
T  33630034 cctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttt 33630091  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 10678204 - 10678240
Alignment:
Q  24 gggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||||||| |||| |||||||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacattttcc 10678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32473435 - 32473494
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  32473435 cctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7617192 - 7617133
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| |||| |||||||||| | |||||||| ||| ||||||||||||||||||||||    
T  7617192 cctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 17208131 - 17208074
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| ||||  |||||||||||| ||||||||| ||||||||||||    
T  17208131 taatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcc 17208074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 30622778 - 30622818
Alignment:
Q  20 aatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  30622778 aatagggtgtatgattaaaggatgttcatgtaacattttcc 30622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33855084 - 33855143
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| |||| |||||| ||| ||||||| || ||| ||||||||||||||||||||||    
T  33855084 cctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 41334716 - 41334763
Alignment:
Q  13 ggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||||||||    
T  41334716 ggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43114616 - 43114557
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  43114616 cctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 966877 - 966934
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  966877 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11825695 - 11825752
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||    
T  11825695 cctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 18491762 - 18491705
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  18491762 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41282015 - 41282072
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||    
T  41282015 cctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12415501 - 12415560
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  12415501 cctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12427561 - 12427620
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  12427561 cctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16804027 - 16803968
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||    
T  16804027 cctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16843309 - 16843250
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||    
T  16843309 cctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 4299463 - 4299518
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    |||||||||  ||||| |||||||||||||||||| |||||||||| |||||||||    
T  4299463 taatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16096806 - 16096747
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| |||| |||||||||| ||||||| || ||| ||||||||||||||||||||||    
T  16096806 cctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34895782 - 34895841
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||||||| |||||||  ||||||||||||||| |||||    
T  34895782 cctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6518510 - 6518566
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    ||||||||||| |||||| ||||| ||||||||||||  |||||||||||||||||||    
T  6518510 cctaatgcatggggtgtacaatagagtgtatgattaa-aggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44112736 - 44112677
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  44112736 cctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 14427404 - 14427347
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 48119685 - 48119628
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  48119685 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41065212 - 41065153
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||||||    
T  41065212 cctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttcc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 35003351 - 35003294
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  35003351 taatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 38113238 - 38113295
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||| |||||||||||    
T  38113238 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 38335975 - 38335918
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| | |||| |||| ||||||||||||| ||||||||||||||||||||||    
T  38335975 taatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45427786 - 45427845
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||||  ||||| ||||||||||||||||||  ||| |||||||||||||||||    
T  45427786 cctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 45639775 - 45639832
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||| ||| |||||| |||||| ||||||||||| | ||||||||||||||||||||    
T  45639775 taatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 46168440 - 46168383
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||  |||||| |||||| | ||||||||| ||||||||||||||||||||||    
T  46168440 taatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 45705882 - 45705825
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||  ||||| |||||  ||||||||||| |||||||||| |||||||||||    
T  45705882 taatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacattttcc 45705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 35000173 - 35000213
Alignment:
Q  20 aatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||| ||||||||||||  |||||||||||||||||||||    
T  35000173 aatagagtgtatgattaaaaggtgttcatgtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 3756289 - 3756344
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||    
T  3756289 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 712017 - 711960
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||  |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  712017 taatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 17619195 - 17619252
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||    
T  17619195 taatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 32728414 - 32728357
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||||||||||||||| || |||||||||||||||||||    
T  32728414 taatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 46827749 - 46827806
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||  |||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  46827749 taatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 55272419 - 55272476
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| ||||| |||||||||||| || |||||||||||||||||||    
T  55272419 taatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 960923 - 960970
Alignment:
Q  13 ggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  960923 ggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48435620 - 48435679
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||||||| |||||||  ||||||||||||||| |||||    
T  48435620 cctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 49229707 - 49229764
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||  ||||| |||||||||||||||||| || ||||||| |||||||||||    
T  49229707 taatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcc 49229764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28988532 - 28988473
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||| |||||| |||||| |||  ||||||||| ||| ||||||||||||||||||||||    
T  28988532 cctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 35037062 - 35037007
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    ||||||||| |||||| ||||| ||||||| |||| ||||| ||||||||||||||    
T  35037062 taatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 1771308 - 1771366
Alignment:
Q  2 ctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||| |||| |||||| ||| ||||||| || ||| ||||||||||||||||||||||    
T  1771308 ctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  24 gggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||||||| |||| |||||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9434183 - 9434124
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  9434183 cctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 10457935 - 10457992
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||    
T  10457935 taatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 4190318 - 4190365
Alignment:
Q  13 ggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  4190318 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34791888 - 34791829
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| ||| || |||| ||||||||||||| ||||||||||||||||||||||    
T  34791888 cctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 51757650 - 51757593
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||||||||||||||| ||||||| |||||| |||||||    
T  51757650 taatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatattttcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 52628020 - 52628077
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||| |||||| |||||| ||||||||||| ||||||||| ||||||||||||    
T  52628020 taatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattttcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 25996315 - 25996268
Alignment:
Q  13 ggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||| |||| | ||||||||||| ||||||||||||||||||||||    
T  25996315 ggtgtacaataagatgtatgattaaagggtgttcatgtaacattttcc 25996268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 36150177 - 36150130
Alignment:
Q  13 ggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||||||||| |||||||||| ||| |||| |||||||||||||||||    
T  36150177 ggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31109263 - 31109322
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||| |||||| |||||||||| || ||||||||||| ||||||||||||||||||||||    
T  31109263 cctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcc 31109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33253972 - 33253913
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||||||||| |||||||  |||||||||||||||||||||    
T  33253972 cctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 27441587 - 27441544
Alignment:
Q  15 tgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  27441587 tgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 33242460 - 33242403
Alignment:
Q  3 taatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    |||| |||| |||||| |||| |||||||||||||  |||||||||||||||||||||    
T  33242460 taatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcc 33242403  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 7273377 - 7273435
Alignment:
Q  2 ctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||| |||| |||||| |||| |||||| || ||| ||||||||||||||||||||||    
T  7273377 ctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

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Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35497 - 35556
Alignment:
Q  1 cctaatgcatgtggtgtataatagggtgtatgattaaggggtgttcatgtaacattttcc 60  Q
    ||||||||||| |||||| |||| |||||||||||||  |||||| ||||||||||||||    
T  35497 cctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 45774 - 45817
Alignment:
Q  15 tgtataatagggtgtatgattaaggggtgttcatgtaacatttt 58  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  45774 tgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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