View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11253_low_15 (Length: 241)

Name: NF11253_low_15
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11253_low_15
NF11253_low_15
[»] chr8 (4 HSPs)
chr8 (20-235)||(10189940-10190158)
chr8 (21-199)||(24125426-24125606)
chr8 (72-199)||(37517538-37517668)
chr8 (72-199)||(500676-500806)
[»] chr3 (3 HSPs)
chr3 (22-199)||(53786107-53786287)
chr3 (116-187)||(52411442-52411513)
chr3 (117-210)||(49018449-49018542)
[»] chr1 (4 HSPs)
chr1 (32-189)||(7794453-7794613)
chr1 (22-188)||(28040666-28040835)
chr1 (72-199)||(37200704-37200834)
chr1 (118-175)||(19035925-19035982)
[»] chr2 (7 HSPs)
chr2 (22-196)||(4412597-4412774)
chr2 (32-175)||(9684967-9685113)
chr2 (22-199)||(20142268-20142448)
chr2 (21-175)||(41867460-41867617)
chr2 (22-199)||(17345037-17345217)
chr2 (109-209)||(19161344-19161444)
chr2 (110-175)||(18744570-18744635)
[»] chr7 (2 HSPs)
chr7 (21-213)||(5827652-5827847)
chr7 (146-213)||(47679647-47679714)
[»] chr4 (2 HSPs)
chr4 (22-199)||(53170897-53171077)
chr4 (72-171)||(48505754-48505856)
[»] chr5 (3 HSPs)
chr5 (72-212)||(3113681-3113824)
chr5 (21-109)||(6534184-6534272)
chr5 (22-175)||(15291575-15291731)
[»] chr6 (4 HSPs)
chr6 (22-157)||(45239-45377)
chr6 (123-213)||(23910804-23910894)
chr6 (22-109)||(32116088-32116175)
chr6 (21-157)||(4206166-4206305)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 10189940 - 10190158
Alignment:
Q  20 tgcatgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatctg---atatta 116  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||  |||||||||   ||||||    
T  10189940 tgcatgctccttaaaagtatccaggcacaccttacggcaaacggggtgcatgtcatcaatatgaaataatagaatcataagacaatatctgcagatatta 10190039  T
Q  117 cgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactgatt 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  10190040 cgatactccactgatgatatatgcttacctaactcatcaacaaggatagttagaagaaaatcatgaacatgtgttacttgcaagcaccctaaaactgatt 10190139  T
Q  217 agatgtctaaaggtcatgt 235  Q
    ||| || ||| ||||||||    
T  10190140 agacgtttaatggtcatgt 10190158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 24125426 - 24125606
Alignment:
Q  21 gcatgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattac 117  Q
    |||||||||  |||||||||||||||| ||||||| |||||  ||  ||| ||||||||| |||||| | |||||||||||| |||| |   |||| |||    
T  24125426 gcatgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcaataggaaatagtggaatcataatgcgatatttaaggatagtac 24125525  T
Q  118 gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 199  Q
    | |||||||||| ||| |||| || ||||||| |||||||  |||||| ||||||||| || ||| |||||| | |||||||    
T  24125526 ggtactccactg-tgacatatcctgacctaacccatcaatcgggatagctagaagaaaatcctgagcatgtgatgcttgcaa 24125606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 37517538 - 37517668
Alignment:
Q  72 tcatcaatatgaaataatagaatcataatgcaatatct---gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagtta 168  Q
    ||||||||| |||||| | ||||||||| || ||||||   ||||||| |||||||||||| ||| ||||| | ||||||| |||||||  ||||| |||    
T  37517538 tcatcaataggaaatagtggaatcataaggcgatatctaaggatattatgatactccactggtgacatatgttgacctaacccatcaatcgggatactta 37517637  T
Q  169 gaagaaagtcatgaacatgtgttacttgcaa 199  Q
    ||||||| |||||| |||||| | |||||||    
T  37517638 gaagaaaatcatgagcatgtgctgcttgcaa 37517668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 500676 - 500806
Alignment:
Q  72 tcatcaatatgaaataatagaatcataatgcaatatct---gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagtta 168  Q
    ||||||||| |||||| | ||||| ||| |||||||||   |||| |||| ||||||| || ||| ||||||| ||||||||||||||| ||||| | ||    
T  500676 tcatcaataggaaatattggaatcgtaaggcaatatctaaggatagtacggtactccattggtgacatatgctgacctaactcatcaatcaggattgcta 500775  T
Q  169 gaagaaagtcatgaacatgtgttacttgcaa 199  Q
    ||||||| |||||| ||| || | |||||||    
T  500776 gaagaaaatcatgagcatatgctgcttgcaa 500806  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 53786107 - 53786287
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    ||||||||  |||||||||||| ||| ||||||| ||||| |||| ||| ||||||||| |||||| | ||||||||| || ||||||   |||| ||||    
T  53786107 catgctccccaaaagtatccaggcacgccttacgacaaacaaggtacacctcatcaataggaaatagttgaatcataaggcgatatctaaggataatacg 53786206  T
Q  119 atactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 199  Q
    ||||||||||| ||| ||||||| ||||||| ||||||| || |||| ||||||||| || ||| |||||| | |||||||    
T  53786207 atactccactggtgacatatgctgacctaacccatcaatcagaatagctagaagaaaatcttgagcatgtggtgcttgcaa 53786287  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 52411513 - 52411442
Alignment:
Q  116 acgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatg 187  Q
    |||||||||||||  ||| ||||||| || ||||||||||||  |||||| ||||||||| |||||| ||||    
T  52411513 acgatactccactcgtgacatatgctgacttaactcatcaatcgggatagctagaagaaaatcatgagcatg 52411442  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 49018449 - 49018542
Alignment:
Q  117 cgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaa 210  Q
    ||||||||||||  ||| ||  ||| ||||||| ||||||| ||||||| ||||||||| |||||| |||||  | ||||||| || |||||||    
T  49018449 cgatactccacttgtgacatgcgctgacctaacccatcaatcaggatagctagaagaaaatcatgagcatgtactgcttgcaaacatcctaaaa 49018542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 7794613 - 7794453
Alignment:
Q  32 aaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatc---tgatattacgatactccact 128  Q
    |||||||||||||||| ||||||| ||||| |||||||| | |||||||||||||||| ||||||||| || |||||    ||||  | | |||||||||    
T  7794613 aaaagtatccagacacgccttacgacaaacaaggtgcaccttatcaatatgaaataatggaatcataaggcgatatcaaaggatagcatggtactccact 7794514  T
Q  129 gatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtg 189  Q
    | ||||||||| | ||||||| ||||||||||||||| || |||||| |||||| ||||||    
T  7794513 ggtgatatatgttgacctaacccatcaataaggatagctataagaaaatcatgagcatgtg 7794453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 28040835 - 28040666
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    |||||||| ||||||||| ||| ||||| |||||||||||  ||  |||  ||||| || |||||||| ||||||||| || ||||||   |||| || |    
T  28040835 catgctccctaaaagtattcagtcacacattacggcaaacagggcacaccacatcattaggaaataatggaatcataaggcgatatctaaggatagtatg 28040736  T
Q  119 atactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgt 188  Q
    ||||||||||| ||| ||||| | |||||||  ||||||  |||||| ||||||||| || ||| |||||    
T  28040735 atactccactggtgacatatgttgacctaaccaatcaatcgggatagctagaagaaaatcttgagcatgt 28040666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 37200704 - 37200834
Alignment:
Q  72 tcatcaatatgaaataatagaatcataatgcaatatct---gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagtta 168  Q
    ||||||||| |||||| | |||| |||| || ||||||   |||| || |||||||||||  ||| ||||||| ||||||| |||| ||| |||||||||    
T  37200704 tcatcaataggaaatagtggaattataaggcgatatctaaggatagtatgatactccactagtgacatatgctgacctaacccatccatatggatagtta 37200803  T
Q  169 gaagaaagtcatgaacatgtgttacttgcaa 199  Q
     |||||| | |||| |||||| |||||||||    
T  37200804 aaagaaaatgatgagcatgtgctacttgcaa 37200834  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 19035925 - 19035982
Alignment:
Q  118 gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 175  Q
    |||||||||||| ||| ||||| | |||||||||||||||  |||||| |||||||||    
T  19035925 gatactccactggtgacatatgttgacctaactcatcaatcgggatagctagaagaaa 19035982  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 4412774 - 4412597
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    ||||||||  |||||||||||||||| ||||||| | ||| |||  ||| ||||||||| |||||| | |||||||||  | ||||||   |||| ||||    
T  4412774 catgctccccaaaagtatccagacacgccttacgaccaacaaggcacacctcatcaataggaaatagtggaatcataagacgatatctaaggatagtacg 4412675  T
Q  119 atactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttg 196  Q
    ||||||||||| ||| ||||||| |||||||||||||||  |||||| ||||||||| || ||| |||||||| ||||    
T  4412674 atactccactggtgacatatgctgacctaactcatcaatcgggatagctagaagaaaatcctgagcatgtgttgcttg 4412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 9685113 - 9684967
Alignment:
Q  32 aaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacgatactccact 128  Q
    |||||||||||||||| ||||||| |||||  ||  | | ||||||||| |||||| | ||||| ||| || ||||||   |||| ||||||||||||||    
T  9685113 aaaagtatccagacacgccttacgacaaacagggcacgcctcatcaataggaaatagtggaatcgtaaggcgatatctaaggatagtacgatactccact 9685014  T
Q  129 gatgatatatgcttacctaactcatcaataaggatagttagaagaaa 175  Q
    | ||| ||||||| ||||||| |||||||| |||||| |||||||||    
T  9685013 ggtgacatatgctgacctaacccatcaatagggatagctagaagaaa 9684967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 20142448 - 20142268
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    ||||||||  |||||||||||||||| ||||||| |||||  ||  ||| |||||| || |||||| | ||||||||| || ||||||   |||| |||     
T  20142448 catgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcattaggaaatagtggaatcataaggcgatatctaaggatagtaca 20142349  T
Q  119 atactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 199  Q
    ||||||||||| ||| ||||||| || |||| |||||||  |||||| ||||||||| || ||| |||||| | |||||||    
T  20142348 atactccactgttgacatatgctgacttaacccatcaatcgggatagctagaagaaaatcctgagcatgtgctgcttgcaa 20142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 41867617 - 41867460
Alignment:
Q  21 gcatgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattac 117  Q
    |||||||||  ||||||||||||||||  |||||| |||||   |  ||| ||||||||| |||||| | |||||||||  | ||||||   |||| |||    
T  41867617 gcatgctccccaaaagtatccagacacgacttacgacaaacagagcacacctcatcaataggaaatagtggaatcataagacgatatctaaggatagtac 41867518  T
Q  118 gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 175  Q
    |||||||||||| ||| ||||||| ||||||| |||||||  |||||| |||||||||    
T  41867517 gatactccactggtgacatatgctgacctaacccatcaatcgggatagctagaagaaa 41867460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 17345037 - 17345217
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    ||||||||  |||||||||||| ||| ||||||| |||||  ||  ||| ||||||||| |||||| | || |||||| || ||||||   |||| ||||    
T  17345037 catgctccccaaaagtatccaggcacgccttacgacaaacagggcacacctcatcaataggaaatagtggattcataaggcgatatctaaggatagtacg 17345136  T
Q  119 atactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 199  Q
    ||||||||||  ||| ||||||  ||||||| |||||||  |||||| ||||||||| || ||| |||||| | |||||||    
T  17345137 atactccactagtgacatatgccgacctaacccatcaattgggatagctagaagaaaatcttgagcatgtggttcttgcaa 17345217  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 19161444 - 19161344
Alignment:
Q  109 tgatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaa 208  Q
    ||||| ||||||||||||||||||| ||||||| |||||||  |||||| ||||||| ||||||||| || ||| ||| | || ||||||| || |||||    
T  19161444 tgatagtacgatactccactgatgacatatgctgacctaacctatcaatcaggatagctagaagaaaatcctgagcatatattgcttgcaaacatcctaa 19161345  T
Q  209 a 209  Q
    |    
T  19161344 a 19161344  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 18744635 - 18744570
Alignment:
Q  110 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 175  Q
    |||| ||||||||||||||| ||| ||||||| ||||||| |||||||  |||||| |||||||||    
T  18744635 gatagtacgatactccactggtgacatatgctaacctaacccatcaatcgggatagctagaagaaa 18744570  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 5827652 - 5827847
Alignment:
Q  21 gcatgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatc---tgatattac 117  Q
    |||||||||  |||||||||||||||| ||||||| |||||  ||  ||| ||||||||| |||||| | |||||||||  | |||||    |||| |||    
T  5827652 gcatgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcaataagaaatagtggaatcataagacgatatcgaaggatagtac 5827751  T
Q  118 gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactg 213  Q
    | |||||||||| ||| ||||||| ||||||| |||||||  |||||| ||||||||| |  ||| |||||| | ||||||| || ||||||||||    
T  5827752 ggtactccactggtgacatatgctgacctaacccatcaattgggatagctagaagaaaattttgagcatgtgctgcttgcaaacatcctaaaactg 5827847  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 47679647 - 47679714
Alignment:
Q  146 taactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactg 213  Q
    |||||||||||| ||||||| ||||||||| || ||| |||||| ||||||||| || ||||||||||    
T  47679647 taactcatcaatcaggatagctagaagaaaatcctgagcatgtgctacttgcaaacatcctaaaactg 47679714  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 53170897 - 53171077
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    ||||||||  |||||||| ||| ||| ||||||| |||||  ||  ||| |||||||||  ||||| | ||||| ||| |  ||||||   |||| ||||    
T  53170897 catgctccccaaaagtattcaggcacgccttacgacaaacagggcacacctcatcaatagaaaatagtggaatcgtaaggtgatatctaaagatagtacg 53170996  T
Q  119 atactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 199  Q
    ||||||||||||||||||||||| | ||||| ||||||| ||||||| ||||||||| || ||| |||||| | |||||||    
T  53170997 atactccactgatgatatatgctgaactaacccatcaattaggatagctagaagaaaatcctgagcatgtgctgcttgcaa 53171077  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 48505856 - 48505754
Alignment:
Q  72 tcatcaatatgaaataatagaatcataatgcaatatct---gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagtta 168  Q
    |||||||||||||||| | ||||||||| || ||||||   |||| ||||||||||||| ||| | ||||| | | ||||| |||||||| |||||| ||    
T  48505856 tcatcaatatgaaatagtggaatcataaggcgatatctaaggataatacgatactccaccgataacatatgttgatctaacccatcaatatggatagcta 48505757  T
Q  169 gaa 171  Q
    |||    
T  48505756 gaa 48505754  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 3113824 - 3113681
Alignment:
Q  72 tcatcaatatgaaataatagaatcataatgcaatatct---gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagtta 168  Q
    ||||||||| || ||| | ||||||||| |||||||||   |||| |||||||||||||| ||||  |||||| |||||| ||||||||  |||||| ||    
T  3113824 tcatcaataggagatagtggaatcataaggcaatatctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagcta 3113725  T
Q  169 gaagaaagtcatgaacatgtgttacttgcaagcagcctaaaact 212  Q
    | ||||| || ||| |||||| | ||| ||| || |||||||||    
T  3113724 ggagaaaatcttgagcatgtgctgcttccaaacaccctaaaact 3113681  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 6534272 - 6534184
Alignment:
Q  21 gcatgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct 109  Q
    ||||||||| ||||||||||||||||  ||||||| |||||  |   ||| ||||||||| ||||||||||||||||  ||||||||||    
T  6534272 gcatgctccataaaagtatccagacatgccttacgacaaacatgacacacctcatcaataagaaataatagaatcattttgcaatatct 6534184  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 15291731 - 15291575
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    ||||||||  |||||||||||||||| |||||||  ||||  |   ||| |||||||||  ||||| | ||||||||   | ||||||   |||| ||||    
T  15291731 catgctccccaaaagtatccagacacgccttacgataaacatgacacacctcatcaatagaaaatagtggaatcatacgacgatatctaaggatagtacg 15291632  T
Q  119 atactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 175  Q
    ||||||||||| ||| ||||||| ||||||| |||||||  |||||| |||||||||    
T  15291631 atactccactggtgacatatgctgacctaacccatcaattgggatagctagaagaaa 15291575  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 45377 - 45239
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattacg 118  Q
    ||||||||  ||||||||| || ||||||||||| |||||  ||  ||| ||||||||| |||||| | ||||||||| |  ||||||   |||| || |    
T  45377 catgctccccaaaagtatcaaggcacaccttacgacaaacagggcacacctcatcaataggaaatattggaatcataaggtgatatctaaggatagtatg 45278  T
Q  119 atactccactgatgatatatgcttacctaactcatcaat 157  Q
    ||||||||| ||||| ||||||| ||||||| |||||||    
T  45277 atactccacagatgacatatgctgacctaacccatcaat 45239  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 23910894 - 23910804
Alignment:
Q  123 tccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactg 213  Q
    ||||||| ||| ||||||| |||||||||||||||  |||||||||||| ||| |  | |||||||||| ||||||| || ||| ||||||    
T  23910894 tccactggtgacatatgctaacctaactcatcaattgggatagttagaaaaaaattctaaacatgtgttgcttgcaaacaccctcaaactg 23910804  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 32116088 - 32116175
Alignment:
Q  22 catgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct 109  Q
    ||||||||  |||||||||||| ||||||||||| |||||  ||  ||| ||||||||| |||||| | |||||||||  ||||||||    
T  32116088 catgctccccaaaagtatccaggcacaccttacgacaaacagggcacacatcatcaataggaaatagttgaatcataagacaatatct 32116175  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 4206305 - 4206166
Alignment:
Q  21 gcatgctccttaaaagtatccagacacaccttacggcaaacgaggtgcacgtcatcaatatgaaataatagaatcataatgcaatatct---gatattac 117  Q
    |||||||||  |||||||||||| ||| ||||||| |||||  ||  | | ||||||||| |||||| | ||||| ||| || | ||||   |||| |||    
T  4206305 gcatgctccccaaaagtatccaggcacgccttacgacaaacagggcacgcctcatcaataggaaatagtggaatcgtaaggcgagatctaaggatagtac 4206206  T
Q  118 gatactccactgatgatatatgcttacctaactcatcaat 157  Q
    | |||||||||| ||| ||||||| ||||||| |||||||    
T  4206205 ggtactccactggtgacatatgctgacctaacccatcaat 4206166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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