View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11253_low_3 (Length: 525)
Name: NF11253_low_3
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_low_3 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 161 - 519
Target Start/End: Original strand, 22498107 - 22498466
Alignment:
| Q |
161 |
caaaataatcctagtttatgcatgggtccatggactatcttgtatgaacagctggcggtctctctaaactaccggttacgacaaatttaactatatagtt |
260 |
Q |
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| T |
22498107 |
caaaataatcctagtttatgcatgggtccatggactatcttgtatgaaccgctggcggtctctctaaactaccggttacgacaaatttaactatataatt |
22498206 |
T |
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| Q |
261 |
ttgattttgaagttacttagagtatta-agagaccaaaagtgtaatcaaaaacgttggctcaacgttattctgctctagaccattaccaatgttttgcaa |
359 |
Q |
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| T |
22498207 |
ttgattttgaagttacttagagtattacagagaccaaaagtgtaatcagaaatgttggctcaacgtttttctgctctagaccattaccaatgttttgcaa |
22498306 |
T |
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| Q |
360 |
acagttgagtaatttctatcactgtagaacagtaagcaagaacgatttgaatatccactgtgtaattcctctcgtctctattttttcgactgaattgtat |
459 |
Q |
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| T |
22498307 |
acagttgagtaatttctatcactgtaggacagtaagcgagaacgatttgaatatccaccgtgtaattcctctcgtctttattttttcgactgaattgtat |
22498406 |
T |
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| Q |
460 |
cctcataaaataattatttggtttgtatttcaaaattgaaccggtgaaacatacctttgc |
519 |
Q |
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| T |
22498407 |
cctcataaaataattatttggtttgtatttcaaaattgaaccggtgaaacatacctttgc |
22498466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 22497999 - 22498115
Alignment:
| Q |
18 |
cgagtgaacgtatttacaaaatttgacatacaaaaatatgaggtctgatagtgtttgagaaagtaacacggttttatgatgctatctgcactatacttgc |
117 |
Q |
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| T |
22497999 |
cgagtgaacgtatttacaaaatttgacatacaaaaatatgagacctgatagtgtttgagaaagtaacacaattttatgatgctatctgcactatacttgc |
22498098 |
T |
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| Q |
118 |
ttcaaaagcaaaataat |
134 |
Q |
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| T |
22498099 |
ttcaaaagcaaaataat |
22498115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 12384 - 12432
Alignment:
| Q |
66 |
tagtgtttgagaaagtaacacggttttatgatgctatctgcactatact |
114 |
Q |
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| T |
12384 |
tagtgtttgagaaagtaacacagttttatgatgccatatgcattatact |
12432 |
T |
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