View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11253_low_5 (Length: 488)
Name: NF11253_low_5
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 31241695 - 31241233
Alignment:
| Q |
17 |
caaaaactgcataacacaatacctctttaacgatgaactaatctagtatccgtctgcagggaaccgaatcagacaactggaggcactggcagtggtatgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241695 |
caaaaactgcataacacaatacctctttaacgatgaactaatctagtatccgtctgcagggaaccgaatcagacaactggaggcactggcagtggtatgc |
31241596 |
T |
|
| Q |
117 |
aagataaccccttcattctctttagcttttattagaagaaactatgttttgttctctttgatttttctgttttacttaaaaataaatttgattatgttat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241595 |
aagataaccccttcattctctttagcttttattagaagaaactatgttttgttctctttgatttttctgttttacttaaaaataaatttgattatgttat |
31241496 |
T |
|
| Q |
217 |
aacttatatgtatgtgcttactcggaannnnnnnaggtgtagatacctgtttctcttaagtatgtggtcagggtttcccttacttctaatatataaactg |
316 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241495 |
aacttatatgtatgtgcttactcagaatttttttaggtgtagatacctgtttctcttaagtatgtggtcagggtttcccttacttctaatatataaactg |
31241396 |
T |
|
| Q |
317 |
gaatactccgttataaacttcaaaatatattggaattaatcaaaatatattcaaatgatacatgaacctcattactcacattaatgaatttaacctcatc |
416 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241395 |
gaatactctgttataaacttcaaaatatattggaattaatcaaaagatattcaaatgatacatgaacctcattactcacattaatgaatttaacctcatt |
31241296 |
T |
|
| Q |
417 |
actcattaatgcatttaacctctcgattttgtactactcggtactcacattaactttgatgtc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31241295 |
actcattaatgcatttaacctctcgattttgtactactcggtactcacattaactttgctgtc |
31241233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University