View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11253_low_9 (Length: 402)
Name: NF11253_low_9
Description: NF11253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11253_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 41247251 - 41247628
Alignment:
| Q |
12 |
tgagatgaatggaataataaatgtagtatattacaaaacaattaa-ggcagataaaaatatatatgaattgtccacaccacttgatttcatatgcatgtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247251 |
tgagatgaatggaataataaatgtagtat--tacaaaacaattaaaggcagataaaaatatatatgaattgtccacaccacttgatttcatatgcatgtt |
41247348 |
T |
|
| Q |
111 |
atgagaatatatgaaaaaagtttaaaaagtagccgatttgaaacaacctaagaacccgccgaagtttttaaatagcatgtcctacaataagatgaatgtg |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247349 |
atgagaatatacgaaaaaagtttaaaaagtagccgatttgaaacaacctaagaacccgccgaagtttttaaatagcatgtcctacaataagatgaatgtg |
41247448 |
T |
|
| Q |
211 |
ctgttaaactcatcacactattcaatatatactaccaaatattaaactaaaaacagtgacagcacgaaacattttgggcctaatatagtaattaaattca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247449 |
ctgttaaactcatcacactattcaatatatactaccaaatattaaactaaaaacagtgacagcacgaaacattttgggcctaatatagtaattaaattca |
41247548 |
T |
|
| Q |
311 |
gagttgtttgttttggcatcatgtgaaatttagagacagtgagggttggttggttgttgagggtggtaaatgtgaaaatt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247549 |
gagttgtttgttttggcatcatgtgaaatttagagacagtgagggttggttggttgttgagggtggtaaatgtgaaaatt |
41247628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University