View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11254_high_2 (Length: 539)
Name: NF11254_high_2
Description: NF11254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11254_high_2 |
 | |
|
| [»] scaffold1075 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1075 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 2554 - 3050
Alignment:
| Q |
1 |
gttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgttaaaaattccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2554 |
gttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgttaaaaaatccc |
2653 |
T |
|
| Q |
101 |
tcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctctacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2654 |
tcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctctacg |
2753 |
T |
|
| Q |
201 |
agcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatgtgcatcgggtcaagattatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2754 |
agcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtcaagattatga |
2853 |
T |
|
| Q |
301 |
cgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagatagcctcttgcctgtccnnn |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2854 |
cgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattgcctcttgcctgtccttt |
2953 |
T |
|
| Q |
401 |
nnnnctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2954 |
ttttctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttat |
3050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 2 - 528
Target Start/End: Complemental strand, 17006542 - 17006016
Alignment:
| Q |
2 |
ttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaaaattgttaaaaattccct |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17006542 |
ttcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatccggcactgtgatattctttaaaattgttaaaaattccct |
17006443 |
T |
|
| Q |
102 |
cttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctctacga |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17006442 |
cttacatttaccagtcaaagtaaaaattgtcggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccataacttcaaggtctcttcga |
17006343 |
T |
|
| Q |
202 |
gcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatgtgcatcgggtcaagattatgac |
301 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17006342 |
gcatcaacatggtctttattctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgcatcgggtcaagattatgac |
17006243 |
T |
|
| Q |
302 |
gcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagatagcctcttgcctgtccnnnn |
401 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17006242 |
gcaaaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttctagattggagggtcatcttttgtagattgcctcttgcctgtcctttt |
17006143 |
T |
|
| Q |
402 |
nnnctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttatgttt |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17006142 |
tttctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttaccaaaaatgacctttatgttt |
17006043 |
T |
|
| Q |
502 |
tcaacctattcaagaacttgatgtcca |
528 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
17006042 |
tcaacctgttgaagaacttgatgtcca |
17006016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University