View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11254_high_3 (Length: 515)
Name: NF11254_high_3
Description: NF11254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11254_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 200 - 498
Target Start/End: Original strand, 34185193 - 34185494
Alignment:
| Q |
200 |
gcaacgctgggacctttagtttagtgagttgcacaaagctaaatggatgaaattatttatatagatcaaccatggaaagacacgttctgattttaaggga |
299 |
Q |
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| T |
34185193 |
gcaacgctgggacctttagtttagtgagttgcacaaagctaaatggatgaaattatttatatagatcaaccatggaaagacacgttctgattttaaggga |
34185292 |
T |
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| Q |
300 |
gtatcatggactaattaaaagcgatgtaatgtactaatgtgttccaaaacgtgtatcaaattaggatgattcttacatagtcacaaacataagtgtaaat |
399 |
Q |
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| T |
34185293 |
gtatcatggactaattaaaagcgatgtaatgtactaatgtgttccaaaacgtgtatcaaattaggatgattcttacatagtcacaaacataagtctaaat |
34185392 |
T |
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| Q |
400 |
catttagacatacacataacaataaacgttaattaatggtggtttaaggatttgaatagatttcttttctaac---aaaccttagagaaattatgtctat |
496 |
Q |
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| T |
34185393 |
catttagacatacacataacaataaacgttaattaatggtggtttaaggatttgaatatatttcttttctaacaataaaccttagagaaattatgtctat |
34185492 |
T |
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| Q |
497 |
aa |
498 |
Q |
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|| |
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| T |
34185493 |
aa |
34185494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 34184995 - 34185133
Alignment:
| Q |
1 |
ctcttccatgtagccggtggctcttcttgttaatatgtttactttattatatttctgaagtgtatgtgtagtgttcttttccttcttatgtgttaacaac |
100 |
Q |
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| T |
34184995 |
ctcttccatgtagccggtggctcttcttgttaatatgtt-actttattatatttctgaagtgtatgtgtagtgttcttttccttcttatgtgttaacaac |
34185093 |
T |
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| Q |
101 |
atatgccagttaaaatttgacaccctgttgccaagtcagc |
140 |
Q |
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| T |
34185094 |
atatgccagttaaaatttgacaccctgttgcccagtcagc |
34185133 |
T |
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