View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11254_high_4 (Length: 462)

Name: NF11254_high_4
Description: NF11254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11254_high_4
NF11254_high_4
[»] chr7 (1 HSPs)
chr7 (17-444)||(45675688-45676101)
[»] chr1 (5 HSPs)
chr1 (261-396)||(37963053-37963188)
chr1 (25-89)||(37962910-37962974)
chr1 (289-327)||(16138163-16138201)
chr1 (263-372)||(51044663-51044772)
chr1 (289-321)||(16127079-16127111)
[»] chr4 (2 HSPs)
chr4 (27-107)||(5690678-5690758)
chr4 (277-320)||(53557711-53557754)
[»] chr3 (3 HSPs)
chr3 (286-317)||(20740369-20740400)
chr3 (287-317)||(20732633-20732663)
chr3 (263-372)||(34626408-34626517)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 45676101 - 45675688
Alignment:
Q  17 attatctaaggcctgatttgaagagaggagcattctcagagcaagaagagaattccataattgaacttcatgcactcctaggcaacaggtaccaataatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676101 attatctaaggcctgatttgaagagaggagcattctcagagcaagaagagaattccataattgaacttcatgcactcctaggcaacaggtaccaataatt 45676002  T
Q  117 gtaataattaaggaactgataagtgttgcatttagatttggcttttaattaagtcatcaagattattttgttacatgcnnnnnnnnnnnnnnctttctac 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |                ||||||||    
T  45676001 gtaataattaaggaattgataagtgttgcatttagatttggcttttaattaagtcatcaagattatttt--tattt------------ttttctttctac 45675916  T
Q  217 gaatcgaagcgacaatgactaatatactttggtgccttttgaattatcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45675915 gaatcgaagcgacaatgactaatatactttggtgccttttgaattatcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgagataa 45675816  T
Q  317 aaaatctatggaattcaagtctgaagaagaagctaaagcaaaaaggaattgatccaaacacacaccaaccattctctgagaacaatgacaatgacacacc 416  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675815 aaaatctatggaattcaagtctgaaaaagaagctaaagcaaaaaggaattgatccaaacacacaccaaccattctctgagaacaatgacaatgacacacc 45675716  T
Q  417 aaatattcagattcaaaaaacctctgtg 444  Q
    ||||||||||||||||||||||||||||    
T  45675715 aaatattcagattcaaaaaacctctgtg 45675688  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 37963053 - 37963188
Alignment:
Q  261 tatcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaa 360  Q
    |||||| ||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||||||||||||| |||| ||||||| | | |  ||||      
T  37963053 tatcagatggtctcagattgcagcacaattaccaggaagaactgacaatgagattaaaaatctatggaattcatgtctcaagaagaggttgagacaaagt 37963152  T
Q  361 ggaattgatccaaacacacaccaaccattctctgag 396  Q
    || |||||||||||||||||| ||||| ||||||||    
T  37963153 ggcattgatccaaacacacacaaaccactctctgag 37963188  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 37962910 - 37962974
Alignment:
Q  25 aggcctgatttgaagagaggagcattctcagagcaagaagagaattccataattgaacttcatgc 89  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||  || ||||||||||||||    
T  37962910 aggcctgatttgaaaagaggagcattctcacaacaagaagagaatttgatcattgaacttcatgc 37962974  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 16138201 - 16138163
Alignment:
Q  289 ttacctggaagaacagacaatgaaataaaaaatctatgg 327  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  16138201 ttacctggaagaacagacaatgaaataaaaaatgtatgg 16138163  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 372
Target Start/End: Original strand, 51044663 - 51044772
Alignment:
Q  263 tcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaagg 362  Q
    |||||||| | || |||||| | || ||||| || |||||||| ||||| ||||||||  | |||||||||||| |||||||||| |||| | || ||||    
T  51044663 tcaggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagg 51044762  T
Q  363 aattgatcca 372  Q
     |||||||||    
T  51044763 gattgatcca 51044772  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 16127111 - 16127079
Alignment:
Q  289 ttacctggaagaacagacaatgaaataaaaaat 321  Q
    |||||||||||||||||||||||||||||||||    
T  16127111 ttacctggaagaacagacaatgaaataaaaaat 16127079  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 5690678 - 5690758
Alignment:
Q  27 gcctgatttgaagagaggagcattctcagagcaagaagagaattccataattgaacttcatgcactcctaggcaacaggta 107  Q
    |||||||||||| ||||||||||||||| |  ||||||||||||  || ||||||||||||||| | || |||||||||||    
T  5690678 gcctgatttgaaaagaggagcattctcacaataagaagagaatttgatcattgaacttcatgcagtacttggcaacaggta 5690758  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 320
Target Start/End: Original strand, 53557711 - 53557754
Alignment:
Q  277 attgcagctcagttacctggaagaacagacaatgaaataaaaaa 320  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  53557711 attgctgctcagttacctggaagaacagacaatgacataaaaaa 53557754  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 317
Target Start/End: Complemental strand, 20740400 - 20740369
Alignment:
Q  286 cagttacctggaagaacagacaatgaaataaa 317  Q
    ||||||||||||||||||||||||||||||||    
T  20740400 cagttacctggaagaacagacaatgaaataaa 20740369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 317
Target Start/End: Complemental strand, 20732663 - 20732633
Alignment:
Q  287 agttacctggaagaacagacaatgaaataaa 317  Q
    |||||||||||||||||||||||||||||||    
T  20732663 agttacctggaagaacagacaatgaaataaa 20732633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 34626517 - 34626408
Alignment:
Q  263 tcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaagg 362  Q
    |||||||| | || |||||||| || ||||| || ||||| || ||||| || |||||  | |||||||||||| |||||||||| |||| | || ||||    
T  34626517 tcaggtgggctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagg 34626418  T
Q  363 aattgatcca 372  Q
     |||||||||    
T  34626417 gattgatcca 34626408  T

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