View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11254_high_6 (Length: 262)
Name: NF11254_high_6
Description: NF11254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11254_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 42671903 - 42671651
Alignment:
| Q |
1 |
agaaagtggttaatgtttacaattattaatctttgtaagaaaaaataaccaatatgttacatatgtttttcgttaaggaatatgttacatatgttgacga |
100 |
Q |
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| T |
42671903 |
agaaagtggttaatgtttacaattattaatctttgtaagaaaaaataaccaatatgttacatatgtttttcgttaaggaatatgttacatatgttgacga |
42671804 |
T |
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| Q |
101 |
cgagatttttgcaacatgcattgacg---------actatttttggtgggaataacaaatcaaaatagattataccagaaaggattaacaactatttgtt |
191 |
Q |
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| T |
42671803 |
cgagatttttgtaacatgcattgacgattcttttaactatttttggtgggaataacaaatcaaaatagattataccagaaaggattaacaactatttgtt |
42671704 |
T |
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| Q |
192 |
acaaacatcttcatacagttttacaaatacaaattaattgaccattctctgct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671703 |
acaaacatcttcatacagttttacaaatacaaattaattgaccattctctgct |
42671651 |
T |
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