View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11254_high_7 (Length: 261)
Name: NF11254_high_7
Description: NF11254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11254_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 869194 - 869441
Alignment:
| Q |
1 |
catttagggataagtttgatcaagacaccccacaattttagagtttccacattgactgctgcaccaatgcaatccaactttgatgggctttcatgtataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
869194 |
catttagggataagtttgatcaagacaccccacaattttagagtttccacattgactgctgcaccaatgcaatccaactttgatgggctttcatgtataa |
869293 |
T |
|
| Q |
101 |
tctcattatcgccaaggttgtccattcgaagctccagatgagagagagacggacctgcaagtgatagccatgaagcaaggccatacacagagaaagggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
869294 |
tctcattatcgccaaggttgtccattcgaagctccagatgagagagagacggacctgcaagtgatagccatgaagcaaggccatacacagagaaagggca |
869393 |
T |
|
| Q |
201 |
gtaaacaactagctcctctaatctctcaacagctgataccattctttt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
869394 |
gtaaacaactagctcctctaatctctcaacagctgataccattctttt |
869441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University