View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11254_high_8 (Length: 229)
Name: NF11254_high_8
Description: NF11254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11254_high_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43459696 - 43459924
Alignment:
| Q |
1 |
ttgaacatgttcataatcatagtaaacaaaattgcaccaatataaacagatgcatcaccctcatttctttgatgcattttagtccttataaaaactgttc |
100 |
Q |
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| T |
43459696 |
ttgaacatgttcataatcatagtaaacaaaattgcaccaatataaacagatgcatcaccctcatttctttgatgcattttagtccttataaaaactgttc |
43459795 |
T |
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| Q |
101 |
cacatatcacagcaataatgcatatttgaactgacttgaatatgtaaataaaagagtttctctttattaaaaggcattctttgtcccaacatgctttgag |
200 |
Q |
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| T |
43459796 |
cacatatcacagcaataatgcatatttgaactgacttgaatatgtaaataaaagagtttctctttattaaaaggcattctttgtcccaacatgctttgag |
43459895 |
T |
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| Q |
201 |
aagtcccattttagagacagtgtatctct |
229 |
Q |
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| T |
43459896 |
aagtcccattttagagacagtgtatctct |
43459924 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 4499353 - 4499267
Alignment:
| Q |
111 |
agcaataatgcatatttgaactgacttgaatatgtaaataaaagagtttctctttattaaaaggcattctttgtcccaacatgcttt |
197 |
Q |
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| T |
4499353 |
agcaatgatgcaaatttgagctgtcttgaaaatgtagacaaaggagtttcttttgataagtagccattctttgtcccaacatgcttt |
4499267 |
T |
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