View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11255_high_1 (Length: 341)
Name: NF11255_high_1
Description: NF11255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11255_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 37446192 - 37446502
Alignment:
| Q |
18 |
tgtgtgactctgaatgtgtgtgtttatatttctcttgatcgggtttgtttatatagtatatgaaattatgaatgttatcaatgatttttgttttattttg |
117 |
Q |
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| T |
37446192 |
tgtgtgactctgaatatgtgtgtttatatttctcttgatcgggtttgtttatatagtatatgaaattatgaatgttatcaatgatttttgttttattttg |
37446291 |
T |
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| Q |
118 |
aaaaggcgcacccacttgattgttataaagataaaaggcaatttgagataaaaacttctaaagtagaagcttcttatccccttacactgtacaatttcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37446292 |
aaaaggcgcacccacttgattgttataaagataaaaggcaatttgagataaaaacttctaaagtagaagcttcttatccccttacactgtacaatttcca |
37446391 |
T |
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| Q |
218 |
actcactatatactacatcaacaaaagcgtagacgtatcgtattgtacaccaatcattaaacacaccaaattaatctaatgttttaactagaacataaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37446392 |
actcactatatactacatcaacaaaagcgtagacgtatcgtattgtacaccaatcattaaacacaccaaattaatcttatgttttaactagaacataaca |
37446491 |
T |
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| Q |
318 |
tgaatctaatc |
328 |
Q |
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|||||| |||| |
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| T |
37446492 |
tgaatcaaatc |
37446502 |
T |
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