View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11255_low_1 (Length: 787)
Name: NF11255_low_1
Description: NF11255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11255_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 23031178 - 23030565
Alignment:
| Q |
1 |
caaggccaactaaatcgtcgacccattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatccttggat |
100 |
Q |
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| T |
23031178 |
caaggccaactaaatcgtcgacccattgataattactaaatgcatgatggccacattcatgtgcaatgacccaaactccggttagaatgcatccttggat |
23031079 |
T |
|
| Q |
101 |
gacccaataaacggcccacgccaaaaatgagaggttatgtggaagggtaggaaaataatttgtggctatgtagacaaggattgatgctatggtaaggtca |
200 |
Q |
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| T |
23031078 |
ggcccaataaacgggccacgccaaaaatgagaggttatgtggaagggtaggaaagtaatttgtggctatataggcaaggattgatgctatggtaaggtca |
23030979 |
T |
|
| Q |
201 |
acaatgacataggaaaatgatctaatcaatgaacggttaaaacaatgtggtggaattgctttcttgacttcaccaagagtgaatggtggttttgtagttg |
300 |
Q |
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| T |
23030978 |
acaatgacataggaaaatgatctaatcaatgaacggtgaaaacaatgtggtggaattgctttcttgacttcaccaagagtgaatggtggttttgtagttg |
23030879 |
T |
|
| Q |
301 |
gaaccctcttcaaatgttcatcattctctattttcctttgtgatggaggattagaggctctaccacctgctcccatttgcacacaacctataaacnnnnn |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030878 |
gaaccctcttcaaatgttcatcattctctattttcctttgtgatggaggattagaggctctaccacctgctcccatttgcacacaacctataaagaaaaa |
23030779 |
T |
|
| Q |
401 |
nncacaatcaccataattattacgtatcactttatatgtagtgcaaattttgttgcaattttcatcatataatcacaacatttttagattaaaagccaag |
500 |
Q |
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| T |
23030778 |
aacacaatcacaataattattacgtatcactttatatgtagtgcaaattttgttgcaattttcatcatataatcacaacatttttagattaaaagccaag |
23030679 |
T |
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| Q |
501 |
tgtatcacatatatttcgctttccttataaatcgtgtgaaatgcaaaatggttgaaattggcaaaacattttttgcgtgtaaaattgaagtatgtcattg |
600 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030678 |
tttatcacatatatt--------gttataaatcgtgtgaaatgcaaaatggttgaaattggcaaaacattttttgcgtgtaaaattgaagtatgtcattg |
23030587 |
T |
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| Q |
601 |
tt--agcatttacacatcaaaa |
620 |
Q |
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|| |||||||||||||||||| |
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| T |
23030586 |
ttagagcatttacacatcaaaa |
23030565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 616 - 770
Target Start/End: Complemental strand, 23030526 - 23030372
Alignment:
| Q |
616 |
caaaatttcattgataacgtgtggtgactttggcttcaacgtttatggtttatagatgaaacaacgtaaacaatctaactaacatatgcaaaataattaa |
715 |
Q |
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| T |
23030526 |
caaaatttcattgataacgtgtggtgactttggcttcaacgtttatggtttatagatgaaacaacgtaaacaatctaactaacatatgcaaaataattaa |
23030427 |
T |
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| Q |
716 |
gtagcttgcgcaatacaaactaaacaactaagtaataagtaaactaggtacaagt |
770 |
Q |
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| T |
23030426 |
gtagcttgtgcaataaaaactaaacaactaagtaataagtaaactaggtacaagt |
23030372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 50593934 - 50593858
Alignment:
| Q |
23 |
ccattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatccttgga |
99 |
Q |
| |
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|||||| || ||||||||||||||||| |||||||| || || || |||||||| ||||| |||||||| ||||||| |
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| T |
50593934 |
ccattggtagttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
50593858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 37020010 - 37019912
Alignment:
| Q |
2 |
aaggccaactaaatcgtcgacccattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatccttggat |
100 |
Q |
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|||||||||| ||| || | ||||||||| | ||| ||||||||||||||||| || ||||||||||||||||| ||||| || ||||| |||||||| |
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| T |
37020010 |
aaggccaactgtatcatcaagccattgatagtcactgaatgcatggtggccacactcatgtgcaatgacccaaacaccggtaaggatgcaaccttggat |
37019912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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