View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11255_low_3 (Length: 247)
Name: NF11255_low_3
Description: NF11255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11255_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 43310935 - 43311172
Alignment:
| Q |
10 |
agaacctgtgtgagaaaactatataactctatttaacagtattatttttctattacattaaaatgttacaattacaatcagatgcaatctacttttaatt |
109 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43310935 |
agaatctgtgtgagaaaactatataactctattcaacagtattatttttctattacattaaaatgttacaattacaatcagatgcaatctacttttaatt |
43311034 |
T |
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| Q |
110 |
catcagttcaataatagcaaaaatgtgaatgactgccatgtaattttgatccacattcatatagtttttatgaatttgactttactaaactgaatagtgt |
209 |
Q |
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| T |
43311035 |
tatcagttcaataatagcaaaaatgtgaatgactgccatgtaattttgatccacattcatatagtttttatgaatttgactttactaaactgaatagtgt |
43311134 |
T |
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| Q |
210 |
atttcggttaaagtgcagaactatatcagttacatgtc |
247 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |
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| T |
43311135 |
atttcagttaaagtgcagaactatatcagttacctgtc |
43311172 |
T |
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