View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11255_low_4 (Length: 241)
Name: NF11255_low_4
Description: NF11255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11255_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 40944027 - 40944247
Alignment:
| Q |
3 |
atggttctgatgcttattctgcttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaaca |
102 |
Q |
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| T |
40944027 |
atggttctgatgcttattctgcttgtttttcagatttttgaatgctggaatatttggaaaaggaagtgagtcaagccacacacttccacacacagcaaca |
40944126 |
T |
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| Q |
103 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
202 |
Q |
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| T |
40944127 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
40944226 |
T |
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| Q |
203 |
tcactccatgtttaccacttc |
223 |
Q |
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||||||||||||||||||||| |
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| T |
40944227 |
tcactccatgtttaccacttc |
40944247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 40958013 - 40958212
Alignment:
| Q |
24 |
cttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgaga |
123 |
Q |
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| T |
40958013 |
cttgttttccaggtttttgaatgcaggaatattcggaaatggaacagagtcaaatcacacactaccacacacggcaacaagagcagccatgctagtgaga |
40958112 |
T |
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| Q |
124 |
atcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
223 |
Q |
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| T |
40958113 |
atcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagccatcactaagctccttaacaacaacgtcactccatgtttaccacttc |
40958212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 28185358 - 28185172
Alignment:
| Q |
37 |
tttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacacactcc |
136 |
Q |
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||||||||||| ||||||||||| || || || || |||| ||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| || | |
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| T |
28185358 |
tttttgaatgccggaatatttggcaatggtacagaatcaaattgtacactaccacatacagcaacaagagctgcaatgcttgtgaggatcaacactcttc |
28185259 |
T |
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| Q |
137 |
tccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
223 |
Q |
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| T |
28185258 |
ttcaagggtattctggtattagatttgaaatcttggaagctatcacaaagctcttgaacaacaatattaccccatgtttaccacttc |
28185172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 42610688 - 42610605
Alignment:
| Q |
93 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
176 |
Q |
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| T |
42610688 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
42610605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 40548770 - 40548956
Alignment:
| Q |
32 |
acagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacac |
131 |
Q |
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|||| ||||||||||||||||| ||||| || ||||| || | |||| ||| | ||||| | |||||||||||||| ||| |||| ||||||||||| |
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| T |
40548770 |
acaggtttttgaatgctggaatttttggtaatggaacagaacaatgccatacattgccacaaaatgcaacaagagctgcaatgttagtaagaatcaacac |
40548869 |
T |
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| Q |
132 |
actcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttacc |
218 |
Q |
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| T |
40548870 |
actccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaaacttctcaaccacaacattacaccatgtttacc |
40548956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 43215871 - 43215965
Alignment:
| Q |
97 |
gcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctcct |
191 |
Q |
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||||||||||| || ||||| ||||| | || || || || ||||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |
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| T |
43215871 |
gcaacaagagcagctatgcttgtgagggttaatacccttctacaaggctattcaggcattagatttgaaatcttagaagctatcaccaagctcct |
43215965 |
T |
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