View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11256_high_4 (Length: 375)
Name: NF11256_high_4
Description: NF11256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11256_high_4 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 40274987 - 40274604
Alignment:
| Q |
1 |
ttgctatttttcttaattgttgaaattcttattcttgaatagacatgagttgcgcttattttgcgatgtatatatggtgtgatgcatgtgttttgtgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40274987 |
ttgctatttttcttaattgttgaaattcttattcttaaatagacatgagttgcgcttattttgcgatgtatatatgatgtgatgcatgtgttttgtgatg |
40274888 |
T |
|
| Q |
101 |
agtaaaactttttatatgagaatatgtgatgaggattgatgtgattaatttaagatgaatgaatacctttgtcagattctgattgatgtgattaacttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40274887 |
agtaaaactttttatatgagaatatgtgatgaggattgatgtgattaatttaagatgaatgaatacctttgtcagattcagattgatgtgattaacttga |
40274788 |
T |
|
| Q |
201 |
gataaatgaatattttttatt-------------acccgtagaccataccatgagttagtgttgattttgatttgtgtttgcccttaaggggtatcctag |
287 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40274787 |
gataaatgaatattttttattacccttatcgattacccgtagaccagaccataagttagtgttgattttgatttgtgtttgcccttaaggggtatcctag |
40274688 |
T |
|
| Q |
288 |
gccaacgaggggggagattagatgcaaggggtaagtgggcgtttgactcatgaatgtaatggttatctatgattcatctctctc |
371 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
40274687 |
gccaacgaggagggagattacatgcaaggggtaagtgagcgtttgactcataaatgtaatggttatatatgattattctctctc |
40274604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 161869 - 161585
Alignment:
| Q |
1 |
ttgctatttttcttaattgttgaaattcttattcttgaatagacatgagttgcgcttattttgcgatgtatatatggtgtgatgcatgtgttttgtgatg |
100 |
Q |
| |
|
||||||||||| |||| || || ||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||| || ||||||| |
|
|
| T |
161869 |
ttgctatttttgttaactgatgtaattcttgttcttgaatagacatgagttgcgtgtatttggcgatgtatatatgatgtgatgtatgtattctgtgatg |
161770 |
T |
|
| Q |
101 |
agtaaaactttttatatgagaatatgtgatgaggattgatgtgattaatttaagatgaatgaatacctttgtcagattctgattgatgtgattaacttga |
200 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||||||||||||||| || | | ||| | ||||| ||||| |||| |||||||||||||| |
|
|
| T |
161769 |
agtaaaattctttatatg--------tgatgaggattgatgtgattaatttaatataactaaatgctcttgtcggattcatattgttgtgattaacttga |
161678 |
T |
|
| Q |
201 |
gataaatgaatattttttattacccgtagaccataccatgagttagtgttgattttgatttgtgtttgcccttaaggggtatcctaggccaacgaggg |
298 |
Q |
| |
|
||| |||||||| |||| ||||||| | | |||||||||| ||||| |||||||||||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
161677 |
gatgaatgaatacttttgattaccctt-----aaaccatgagttggtgttaattttgatttgtgtttgctcttaagttgtatcctagaccaacgaggg |
161585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 19790216 - 19790064
Alignment:
| Q |
1 |
ttgctatttttcttaattgttgaaattcttattcttgaatagacatgagttgcgcttattttgcgatgtatatatggtgtgatgcatgtgttttgtgatg |
100 |
Q |
| |
|
||||||||||| || |||| ||||||||| ||||||||||||||||||||| | ||| | | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19790216 |
ttgctatttttttttattgc-gaaattcttgttcttgaatagacatgagttgtacgtatctagtgatgtatatatgatgtgatgcatgtgttttgtgatg |
19790118 |
T |
|
| Q |
101 |
agt-aaaactttttatatgagaatatgtgatgaggattgatgtgattaatttaa |
153 |
Q |
| |
|
||| |||| ||| |||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
19790117 |
agtaaaaaatttgtatatgagaatatgtgatgaagattgatgtggttaatttaa |
19790064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 19790058 - 19789981
Alignment:
| Q |
113 |
tatatgagaatatgtgatgaggattgatgtgattaatttaagatgaatgaatacctttgtcagattctgattgatgtg |
190 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
19790058 |
tatatgagaaaatgtgatgaagattaatgtggttaatttaagaggaatgaatacccttgtcagattcggattgttgtg |
19789981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 347
Target Start/End: Complemental strand, 19789942 - 19789763
Alignment:
| Q |
172 |
tcagattctgattgatgtgattaacttgagataaatgaatattttttattacccgta-----gacc---ataccatgagttagtgttgattttgatttgt |
263 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |||| ||||||| || ||| | ||||||| ||||| ||||||||| |||| |
|
|
| T |
19789942 |
tcagattcagattgatgtgattaacttgagatgaatgaata-ttttgattacccttatcgattacccttaaaccatgaattagtattgattttgtgttgt |
19789844 |
T |
|
| Q |
264 |
gtttgcccttaaggggtatcctaggccaacgaggggggagattagatgcaaggggtaagtgggcgtttgactcatgaatgtaat |
347 |
Q |
| |
|
|||||| ||| | | ||||| ||||||||||| |||||||||| ||| |||||||||| | | |||| |||||||| |||||| |
|
|
| T |
19789843 |
gtttgctctt-atgtgtatcataggccaacga--ggggagattatatgtaaggggtaagcgagtgtttcactcatgagtgtaat |
19789763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 348
Target Start/End: Complemental strand, 26707023 - 26706910
Alignment:
| Q |
235 |
accatgagttagtgttgattttgatttgtgtttgcccttaaggggtatcctaggccaacgaggggggagattagatgcaaggggtaagtgggcgtttgac |
334 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| |||||||||| || ||||||||||| ||| ||||||||||| |||||||||| | | |||||| |
|
|
| T |
26707023 |
accatgagttagtgatgattttgatttatgtttgctcttaaggggtgtcgtaggccaacgaagggagagattagatgtaaggggtaagcgaccatttgac |
26706924 |
T |
|
| Q |
335 |
tcatgaatgtaatg |
348 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
26706923 |
tcatgattgtaatg |
26706910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 7902885 - 7902936
Alignment:
| Q |
260 |
ttgtgtttgcccttaaggggtatcctaggccaacgaggggggagattagatg |
311 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
7902885 |
ttgtgtttgcttctaaggggtatcctatgccaacgaggggagagattagatg |
7902936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 34487972 - 34487909
Alignment:
| Q |
247 |
tgttgattttgatttgtgtttgcccttaaggggtatcctaggccaacgaggggggagattagat |
310 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
34487972 |
tgttgattttgatttgtatttgctcttaaggtgtatcataggccaacgaggggagagattagat |
34487909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 277
Target Start/End: Original strand, 12926122 - 12926276
Alignment:
| Q |
131 |
gaggattgatgtgattaatttaagatgaatgaatacctttgtcagattctgattgatgtgattaacttgagataaatgaatattttttattacccgta-- |
228 |
Q |
| |
|
||||||||| |||||||||||||||| | | ||||| | ||| ||||| |||| ||||||||||||||||| |||||||| |||| ||| ||| || |
|
|
| T |
12926122 |
gaggattgacgtgattaatttaagataactaaatactctcgtcggattcatattgttgtgattaacttgagatgaatgaatacttttgattgcccttatc |
12926221 |
T |
|
| Q |
229 |
---gacc---ataccatgagttagtgttgattttgatttgtgtttgcccttaagg |
277 |
Q |
| |
|
||| | |||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
12926222 |
gattacccttaaaccatgagttagtgttaattttgatttgtgtttgctcttaagg |
12926276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University