View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11256_low_1 (Length: 762)
Name: NF11256_low_1
Description: NF11256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11256_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 233 - 744
Target Start/End: Complemental strand, 30745523 - 30745014
Alignment:
| Q |
233 |
tagtatgtgagggtcgatgttcgaacctcggtcaccctcacttgttca-tttaagaggtgaatttctagttacttcacnnnnnnnnn-tgtttaatgaac |
330 |
Q |
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| T |
30745523 |
tagtatgtgagggtcgatgtttgaacttcagtcaccc-cacttgttcactttaagaggtgaatttctagtgacttgaaagaaaaaaaatgtttaatgaac |
30745425 |
T |
|
| Q |
331 |
ttaacgtttttggaactgaatcacctcctgct---tttctactgctat-----ctctcctgcgcagttatgatgtgttggatttaatccaacggtgtaga |
422 |
Q |
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| T |
30745424 |
ttaacgtttttggaactggatcacctcctgctgcttttctactgccatgccatctctcctgcgcagttatgatgtgttggatttaatccagcggtggaga |
30745325 |
T |
|
| Q |
423 |
caaaaagagaggaaaaaggggcaaggagagagaaatgtcaactgcctttctctattattatcgctctctggattcaaaattgtcttcctttaagttcagt |
522 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30745324 |
caaa--gagaggaaaaaggggcaag-agagagaaatgtcaactgcctttctctattat---cgctctctggattcaaaattgtcttcctttaagttcagt |
30745231 |
T |
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| Q |
523 |
ttaaaagaagatttgacgggaaggagcaatacgttacgtgattaaatcacatctttctttaacagtggtaaagaaaaagaaaaactaattggggatgaat |
622 |
Q |
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| T |
30745230 |
ttaaaagaagatttgacgggaaggagcaatacgt-----gagtaaatcacatctttctttaatagtggtaaagaaaaagaaaaactaattggggatgaat |
30745136 |
T |
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| Q |
623 |
aaattacaaacacaaaattgaagcatattttgagaatattttaagcaaaaaataatcagaatttgagaaataattacaactttttccttttaaactggtt |
722 |
Q |
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| T |
30745135 |
aaattacaaacacaaaattgaagcatattttgagaatattttaagcaaaaaataatcagaatttgagaaatagttacaactttttccttttaaactggtt |
30745036 |
T |
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| Q |
723 |
gaattatactgtaacaaagata |
744 |
Q |
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| T |
30745035 |
gaattatactgtaacaaagata |
30745014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 30745881 - 30745835
Alignment:
| Q |
188 |
gaacttttgtttgagtttagctcaattgatagagacaatacattgta |
234 |
Q |
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||||| ||| |||||||||||||||||||||||||||| | |||||| |
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| T |
30745881 |
gaactgttgattgagtttagctcaattgatagagacaaaatattgta |
30745835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26490974 - 26490823
Alignment:
| Q |
1 |
taaccattgtgcaggctattttgccaagttagggccaacctccgatgctaacttcctgcttcactcgtcacctcctgatgatcttcgacctctccttcga |
100 |
Q |
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| T |
26490974 |
taaccattgtgcagactattttgccaagttaggggcaacatccgatgctaacttcctgcttcactcgtcaccacctgatgatcttcgacctctccttcga |
26490875 |
T |
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| Q |
101 |
aatgatgctaccggaactttgttcctgaggacttagttttcttctttgtttc |
152 |
Q |
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| T |
26490874 |
aatgatgctaccggaactttgttcctgaggacttagttttcttctttgtttc |
26490823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 32585400 - 32585448
Alignment:
| Q |
251 |
gttcgaacctcggtcaccctcacttgttcatttaagaggtgaatttctag |
300 |
Q |
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| T |
32585400 |
gttcgaaccccggacaccc-cactttttcatttaagaggtgaatttctag |
32585448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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