View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11256_low_2 (Length: 610)
Name: NF11256_low_2
Description: NF11256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11256_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 21 - 561
Target Start/End: Complemental strand, 2264377 - 2263839
Alignment:
| Q |
21 |
atttgcctcaaaattaaatatgaaggtctccatatccttcacagtcatatgattacttgatt--attttaatacaaagggtctaatacaccacctaaaaa |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| | |||||| || | |||||||||||||||||||||||||||||||||||| |
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| T |
2264377 |
atttgcctcaaaattgaatatgaaggtctccatatccttcacagtact-tgattattttacagaattttaatacaaagggtctaatacaccacctaaaaa |
2264279 |
T |
|
| Q |
119 |
gtggcgtaagaaacgaccaaagagagaacgagaataacgattggtgccaatttggttggatttattatcacggcggatctaacattgtttttcacatcgt |
218 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2264278 |
gtggcgtaagaaacgaccaaagagacaatgagaataacgattggtgccaatttggttggatttattatcacggcggatctaacattgtttttcacatcgt |
2264179 |
T |
|
| Q |
219 |
acgaattcttgcctttatcaatttggttggaattattatcatgaagactcgtcttcttcatttttgcaccaatcgttatttcaagggacttgatttcata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
2264178 |
acgaattcttgcctttatcaatttggttggaattattatcatgaagactcgtcttcttcattttggcaccaatcgttatttcaagggacttgatttcgta |
2264079 |
T |
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| Q |
319 |
catatgaagacagtcaaatcaagtcgtagaaaaatattatcaatatataaaattgattttatacagnnnnnnncttcaaattggacgaaataagtatttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
2264078 |
catatgaagacagtcaaatcaagtcgtagaaaaatattatcaatatataaaatttattttatacattttttttcttcaaattggactaaataagtatttg |
2263979 |
T |
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| Q |
419 |
gtgtctataaatattttaaattttgcttttagtctttctnnnnnnnttcttccatttgcggtcctcttaatattttccaataccacttataactgtgctc |
518 |
Q |
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|| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2263978 |
gtctctataaatattttaaattttgcttttagtcttttt---caaattcttccatttgcggtcctcctaatatttttcaataccacttataactgtgctc |
2263882 |
T |
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| Q |
519 |
acgtggattccttcaaaatttgaatttttatcttgcaatcatg |
561 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2263881 |
acgtggattcattcaaaatttgaatttttatcttgcaatcatg |
2263839 |
T |
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