View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11256_low_3 (Length: 411)
Name: NF11256_low_3
Description: NF11256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11256_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 31870458 - 31870073
Alignment:
| Q |
11 |
cagagaaggccaagaagaaaggggaagctttagatggttcattggcgatggagatatcgccggcggatttggataatgtgaaggagaagaaggaattgat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870458 |
cagagaaggccaagaagaaaggggaagctttagatggttcattggcgatggagatatcgcccgcggatttggataatgtgaaggagaagaaggaattgat |
31870359 |
T |
|
| Q |
111 |
ggaggagagatgtgctgcttattggactacattggctcctaatgtggaggattatagtggaaccgcggcgaagctgatcgcggccggttctggtcaattg |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870358 |
ggaggagagatgtgctgcctattggactacattggctcctaatgtggaggattatagtggaaccgcggcgaagctgatcgcggccggttctggtcaattg |
31870259 |
T |
|
| Q |
211 |
gttaaagggattttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaagaggatgggtcctcctacacaggctgaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31870258 |
gttaaagggattttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaagaagatgggtcctcctacacaggctgaga |
31870159 |
T |
|
| Q |
311 |
ttaatccacaaaccttaaagaggattcaaaggtgaccctgcttaatcttggtttttgttttagttaattttgattttagttaaaag |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870158 |
ttaatccacaaaccttaaagaggattcaaaggtgaccctgcttaatcttggtttttgttttagttaattttgattttagttaaaag |
31870073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 8851494 - 8851693
Alignment:
| Q |
90 |
gaaggagaagaaggaattgatggaggagagatgtgctgcttattggactacattggctcctaatgtggaggattatagtggaaccgcggcgaagctgatc |
189 |
Q |
| |
|
|||| |||||||||| ||||||||| | |||||| || ||||||||||||||||| || ||||||||||| |||||||| || || |||| | |||| |
|
|
| T |
8851494 |
gaagaagaagaaggagatgatggaggggcaatgtgcggcgtattggactacattggcaccgaatgtggaggagtatagtgggactgctgcgaggatgata |
8851593 |
T |
|
| Q |
190 |
gcggccggttctggtcaattggttaaagggattttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaagaggatgg |
289 |
Q |
| |
|
|| | || ||||| || || | || ||||||||||||||||| ||||||||| | ||||||||| ||||||| ||| || |||||||||| ||||||| |
|
|
| T |
8851594 |
gcttcggggtctggacatgtgatcaaggggattttgtggtgtggtgatgttactatggataggttgcaatgggggaatcaggttatgaagaaaaggatgg |
8851693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 27878369 - 27878304
Alignment:
| Q |
220 |
attttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaagagg |
285 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||||| |||| | |||||||||||| |
|
|
| T |
27878369 |
attttgtggtgcggtgatgttactgttgatagattgaaatggggtgatgatttcatgaagaagagg |
27878304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 27878466 - 27878417
Alignment:
| Q |
123 |
tgctgcttattggactacattggctcctaatgtggaggattatagtggaa |
172 |
Q |
| |
|
||||||||||||||| || ||||| || || ||||||||||||||||||| |
|
|
| T |
27878466 |
tgctgcttattggacaacgttggcaccaaacgtggaggattatagtggaa |
27878417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University