View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11256_low_5 (Length: 346)

Name: NF11256_low_5
Description: NF11256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11256_low_5
NF11256_low_5
[»] chr8 (1 HSPs)
chr8 (122-295)||(14789288-14789461)
[»] chr2 (1 HSPs)
chr2 (122-295)||(2705622-2705795)
[»] chr5 (4 HSPs)
chr5 (134-209)||(22311520-22311595)
chr5 (135-205)||(24275945-24276015)
chr5 (135-205)||(24386198-24386268)
chr5 (134-209)||(36098571-36098646)
[»] scaffold0003 (2 HSPs)
scaffold0003 (134-209)||(208111-208186)
scaffold0003 (134-209)||(213163-213238)
[»] scaffold0077 (2 HSPs)
scaffold0077 (134-209)||(48549-48624)
scaffold0077 (134-209)||(58304-58379)
[»] chr3 (1 HSPs)
chr3 (134-209)||(41931940-41932015)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 122 - 295
Target Start/End: Original strand, 14789288 - 14789461
Alignment:
Q  122 cactaagcctcatcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgtctatgacactcg 221  Q
    ||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  14789288 cactaagcctcatcatgtgttccttgaacatgtgacaatacaaaatagaaatttgtcaaatcctaaaatggcatcatgtgctctcagtctatgacactcg 14789387  T
Q  222 ttatttccacttgtttatctttgtccttcgtctgactgtaatttgatcgtctttcagacaattcttgctgtcta 295  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  14789388 ttatttccacttgtttatctttatccttcgtctgactgtaatttgatcgtctttcagacaattcctgctatcta 14789461  T

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Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 2705795 - 2705622
Alignment:
Q  122 cactaagcctcatcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgtctatgacactcg 221  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  2705795 cactaagcctcaccatgtgttccttgaacatgtgacaatgcaaaatagatatttgtcaaatcctgaaatggcatcatgtgctctccgtctatgacattcg 2705696  T
Q  222 ttatttccacttgtttatctttgtccttcgtctgactgtaatttgatcgtctttcagacaattcttgctgtcta 295  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  2705695 ttatttccacttgtttatctttgtccttcgtatgactgtaattcgatcgtctttcagacaattcttgctgtcta 2705622  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 22311520 - 22311595
Alignment:
Q  134 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 209  Q
    ||||||||| |||||||||||||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  22311520 tcatgtgttccttgaacatgtgacgatgtaaaatttaaatttgtcaaatcattaaatggcatcatgtgatctctgt 22311595  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 24275945 - 24276015
Alignment:
Q  135 catgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctct 205  Q
    |||||||| ||||||||||||||||  |  |||  |||||||||||||| ||||||||||||||| |||||    
T  24275945 catgtgttccttgaacatgtgacaacacacaatttaaatttgtcaaatcttgaaatggcatcatgggctct 24276015  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 24386268 - 24386198
Alignment:
Q  135 catgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctct 205  Q
    |||||||| ||||||||||||||||  |  |||  |||||||||||||| ||||||||||||||| |||||    
T  24386268 catgtgttccttgaacatgtgacaacacacaatttaaatttgtcaaatcttgaaatggcatcatgggctct 24386198  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 36098571 - 36098646
Alignment:
Q  134 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 209  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | |||| |||||||||| |||||||    
T  36098571 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattaaatagcatcatgtgatctctgt 36098646  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 208111 - 208186
Alignment:
Q  134 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 209  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  208111 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattaaatggcatcatgtgatctctgt 208186  T

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Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 213163 - 213238
Alignment:
Q  134 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 209  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | | ||||||||||||| |||||||    
T  213163 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattagatggcatcatgtgatctctgt 213238  T

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Target: scaffold0077 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 48549 - 48624
Alignment:
Q  134 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 209  Q
    ||||||||| ||||||||  |||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  48549 tcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaatggcatcatgtgatctctgt 48624  T

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Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 58304 - 58379
Alignment:
Q  134 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 209  Q
    ||||||||| ||||||||  |||| |||  ||||  |||||||||||||| | ||||||||||||||| |||||||    
T  58304 tcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaatggcatcatgtgatctctgt 58379  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 41932015 - 41931940
Alignment:
Q  134 tcatgtgtttcttgaacatgtgacaatgctaaatagaaatttgtcaaatcctgaaatggcatcatgtgctctctgt 209  Q
    ||||||||| |||||||| ||||| |||  ||||  |||||||||||||| | | ||||||||||||| |||||||    
T  41932015 tcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaaatcattacatggcatcatgtgatctctgt 41931940  T

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