View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11256_low_6 (Length: 305)

Name: NF11256_low_6
Description: NF11256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11256_low_6
NF11256_low_6
[»] chr7 (2 HSPs)
chr7 (15-305)||(23367478-23367768)
chr7 (100-128)||(31954290-31954318)
[»] chr3 (5 HSPs)
chr3 (24-98)||(24229571-24229645)
chr3 (63-125)||(48506993-48507054)
chr3 (73-125)||(13349446-13349498)
chr3 (73-125)||(48506468-48506519)
chr3 (100-128)||(48648231-48648259)
[»] chr5 (1 HSPs)
chr5 (86-128)||(19128797-19128839)
[»] chr4 (11 HSPs)
chr4 (86-128)||(43146699-43146741)
chr4 (93-128)||(8248510-8248545)
chr4 (93-128)||(8266175-8266210)
chr4 (86-128)||(5046012-5046054)
chr4 (86-128)||(8247724-8247766)
chr4 (86-128)||(8265389-8265431)
chr4 (86-128)||(47688462-47688504)
chr4 (63-125)||(56262509-56262570)
chr4 (86-127)||(45921065-45921106)
chr4 (87-128)||(55001424-55001465)
chr4 (86-126)||(12920257-12920297)
[»] chr6 (2 HSPs)
chr6 (86-125)||(21133209-21133248)
chr6 (86-123)||(19654002-19654039)
[»] chr8 (1 HSPs)
chr8 (93-127)||(26654367-26654401)
[»] chr1 (2 HSPs)
chr1 (100-128)||(25469083-25469111)
chr1 (73-125)||(32038507-32038559)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 23367768 - 23367478
Alignment:
Q  15 acatcaatagtgtgtgagcgagagaaatgatactcatgaaatagagacgtagattagctatggacctttgaattaaacaaaatacacggttaagatttgg 114  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||    
T  23367768 acattaatagtgtgtgagtgagagaaatgatactcacgaaatagagacgtagattagctatggacttttggattaaacaaaatacacggttgagatttgg 23367669  T
Q  115 tgtcaacgaatccgatagtgtcaacagatcctgactccagttaatctgtttaaacaattaaacagtgtaaaataatataaaatgtaagtgaagtctattt 214  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23367668 tgtcaacgaatccgatagtgtcaacggatcctgactctagttaatctgtttaaacaattaaacagtgtaaaataatataaaatgtaagtgaagtctattt 23367569  T
Q  215 aaaccaccaagttggagatctaggatgcgtaatctctaagcgaactcttttaaggactttagataccaaatcaatataaacacaagcaatg 305  Q
    |||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23367568 aaaccaccaagttggatatcttggatgtgtaatctctaatcgaactcttttaaggactttagataccaaatcaatataaacacaagcaatg 23367478  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 31954290 - 31954318
Alignment:
Q  100 acggttaagatttggtgtcaacgaatccg 128  Q
    |||||||||||||||||||||||||||||    
T  31954290 acggttaagatttggtgtcaacgaatccg 31954318  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 24229571 - 24229645
Alignment:
Q  24 gtgtgtgagcgagagaaatgatactcatgaaatagagacgtagattagctatggacctttgaattaaacaaaata 98  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||||||  ||| ||||||||| ||||||||||||    
T  24229571 gtgtgtgagtgagagaaatgatactcacgaaatagagacgaagattaattattgacctttgagttaaacaaaata 24229645  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 48506993 - 48507054
Alignment:
Q  63 gtagattagctatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 125  Q
    ||||||||  |||||||||||| |||||| || ||| |||||| |||||||||||||||||||    
T  48506993 gtagattaattatggacctttggattaaa-aatatagacggttgagatttggtgtcaacgaat 48507054  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 13349498 - 13349446
Alignment:
Q  73 tatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 125  Q
    |||||| | ||| |||||| ||| || ||||||||||||||||||||||||||    
T  13349498 tatggatcattggattaaataaattagacggttaagatttggtgtcaacgaat 13349446  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 48506519 - 48506468
Alignment:
Q  73 tatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 125  Q
    |||||||||||| |||||| || ||| |||||| |||||||||||||||||||    
T  48506519 tatggacctttggattaaa-aatatagacggttgagatttggtgtcaacgaat 48506468  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 48648259 - 48648231
Alignment:
Q  100 acggttaagatttggtgtcaacgaatccg 128  Q
    |||||||||||||||||||||||||||||    
T  48648259 acggttaagatttggtgtcaacgaatccg 48648231  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 19128839 - 19128797
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  19128839 attaaataaaataaacggttaagatttggtgtcaacgaatccg 19128797  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 43146741 - 43146699
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  43146741 attaaataaaataaacggttaagatttggtgtcaacgaatccg 43146699  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 8248510 - 8248545
Alignment:
Q  93 aaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||||||||||||||||||||||||||    
T  8248510 aaaatagacggttaagatttggtgtcaacgaatccg 8248545  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 8266175 - 8266210
Alignment:
Q  93 aaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||||||||||||||||||||||||||    
T  8266175 aaaatagacggttaagatttggtgtcaacgaatccg 8266210  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 5046054 - 5046012
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||| |||||| ||||||||||||||||||||||    
T  5046054 attaaataaaataaacggttgagatttggtgtcaacgaatccg 5046012  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 8247766 - 8247724
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||| ||||||||||||| |||||||||||||||    
T  8247766 attaaataaaatagacggttaagattttgtgtcaacgaatccg 8247724  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 8265431 - 8265389
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||| ||||||||||||| |||||||||||||||    
T  8265431 attaaataaaatagacggttaagattttgtgtcaacgaatccg 8265389  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 47688462 - 47688504
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    |||||| |||||| |||||| ||||||||||||||||||||||    
T  47688462 attaaataaaataaacggttgagatttggtgtcaacgaatccg 47688504  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 56262570 - 56262509
Alignment:
Q  63 gtagattagctatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 125  Q
    ||||||||  |||||||||||| |||||| || ||| |||||| |||||||||||||||||||    
T  56262570 gtagattaattatggacctttggattaaa-aatatagacggttgagatttggtgtcaacgaat 56262509  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 45921065 - 45921106
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatcc 127  Q
    |||||| |||||| |||||||||||||||||||||| |||||    
T  45921065 attaaataaaataaacggttaagatttggtgtcaacaaatcc 45921106  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 55001424 - 55001465
Alignment:
Q  87 ttaaacaaaatacacggttaagatttggtgtcaacgaatccg 128  Q
    ||||| |||||| ||||||||||||| |||||||||||||||    
T  55001424 ttaaataaaataaacggttaagatttagtgtcaacgaatccg 55001465  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 12920257 - 12920297
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaatc 126  Q
    |||||| |||||| |||||| ||||||||||||||||||||    
T  12920257 attaaataaaataaacggttgagatttggtgtcaacgaatc 12920297  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 21133209 - 21133248
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacgaat 125  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  21133209 attaaataaaataaacggttaagatttggtgtcaacgaat 21133248  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 19654039 - 19654002
Alignment:
Q  86 attaaacaaaatacacggttaagatttggtgtcaacga 123  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  19654039 attaaataaaataaacggttaagatttggtgtcaacga 19654002  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 26654367 - 26654401
Alignment:
Q  93 aaaatacacggttaagatttggtgtcaacgaatcc 127  Q
    |||||| ||||||||||||||||||||||||||||    
T  26654367 aaaatagacggttaagatttggtgtcaacgaatcc 26654401  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 25469083 - 25469111
Alignment:
Q  100 acggttaagatttggtgtcaacgaatccg 128  Q
    |||||||||||||||||||||||||||||    
T  25469083 acggttaagatttggtgtcaacgaatccg 25469111  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 32038559 - 32038507
Alignment:
Q  73 tatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 125  Q
    |||||| | |||||||||| ||| || |||||| |||||||||||||||||||    
T  32038559 tatggatcattgaattaaataaattagacggttgagatttggtgtcaacgaat 32038507  T

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