View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11257_low_1 (Length: 535)

Name: NF11257_low_1
Description: NF11257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11257_low_1
NF11257_low_1
[»] chr5 (2 HSPs)
chr5 (25-522)||(10547356-10547853)
chr5 (369-397)||(29846907-29846935)
[»] chr8 (3 HSPs)
chr8 (25-119)||(30364001-30364095)
chr8 (371-404)||(27290252-27290285)
chr8 (384-428)||(39902868-39902912)
[»] chr3 (1 HSPs)
chr3 (25-127)||(31466475-31466578)
[»] chr4 (2 HSPs)
chr4 (384-431)||(12105554-12105601)
chr4 (371-432)||(52878800-52878861)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 25 - 522
Target Start/End: Original strand, 10547356 - 10547853
Alignment:
Q  25 atgagtatgattgaagtcataagagagcttaatataatcaaaagtttctttcctcccggggctcaagctgaattacaaccaccaaaagtatgatgtaaag 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10547356 atgagtatgattgaagtcataagagagcttaatataatcaaaagtttctttcctcccggggctcaagctgaattacaaccaccaaaaggatgatgtaaag 10547455  T
Q  125 gtggcactatcgtagttttgctagttatacttaccattttcatgnnnnnnnnnnnnnnnngtnnnnnnnctggttagatgtacatgtaatgcatggattc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||                ||       |||||||||||||||||||||||||||||||    
T  10547456 gtggcactatcgtagttttgctagttatacttaccattttcatgtttttctttttcttttgtaaaaaaactggttagatgtacatgtaatgcatggattc 10547555  T
Q  225 cttccttttaagctttaaggtgtgtttaacttattattttgagatcatgtttaaatgttttttggaatcctaatgaagttgaggttaacggaagtaggta 324  Q
    |||||||||||| |||||||||||||||||||||||||| |||||                |||||||||||||| ||||||||||||||||||||||||    
T  10547556 cttccttttaagttttaaggtgtgtttaacttattatttcgagat----------------ttggaatcctaatggagttgaggttaacggaagtaggta 10547639  T
Q  325 gactctcacaatcacactaatcaatatttaaactctaacatgcctcatattcagtgtctgacatgcctcaaataaaattatctacttaagattcttaatt 424  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547640 gactctcacaatcacactaatcaatatttaaactctgacatgtctcatatttagtgtctgacatgcctcaaataaaattatctacttaagattcttaatt 10547739  T
Q  425 tttatatttctctataaacacat----------------gttgaaaattcgctttagacctacaaatgcattggacaaactctaataaaagtccaccttc 508  Q
    |||||||||||||||||||||||                 || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10547740 tttatatttctctataaacacatttggaaggtcttcttaattaaaaattcgctttagacctacaaatgcattggacgaactctaataaaagtccaccttc 10547839  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 397
Target Start/End: Original strand, 29846907 - 29846935
Alignment:
Q  369 tcatattcagtgtctgacatgcctcaaat 397  Q
    |||||||||||||||||||||||||||||    
T  29846907 tcatattcagtgtctgacatgcctcaaat 29846935  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 30364001 - 30364095
Alignment:
Q  25 atgagtatgattgaagtcataagagagcttaatataatcaaaagtttctttcctcccg-gggctcaagctgaattacaaccaccaaaagtatgatg 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||| |||||||||||||    
T  30364001 atgagtatggttgaagtcataagagagcttaatataatcaaaagtttctttcctactgtggggtcaagctgaattacaacca-caaaagtatgatg 30364095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 27290252 - 27290285
Alignment:
Q  371 atattcagtgtctgacatgcctcaaataaaatta 404  Q
    ||||| ||||||||||||||||||||||||||||    
T  27290252 atatttagtgtctgacatgcctcaaataaaatta 27290285  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 39902912 - 39902868
Alignment:
Q  384 gacatgcctcaaataaaattatctacttaagattcttaattttta 428  Q
    |||||||||||||||||||||  || ||| |||||||||||||||    
T  39902912 gacatgcctcaaataaaattacatatttatgattcttaattttta 39902868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 31466578 - 31466475
Alignment:
Q  25 atgagtatgattgaagtcataagagagcttaatataatcaaaagtttctttcctcccggggctcaagctgaattacaaccac-caaaagtatgatgtaaa 123  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||  |||||||||||||||     
T  31466578 atgagtatggttgaagtcattagagagcttaatataattaaaagtttctttcctactggggatcaagctgaattacaaccacaaaaaagtatgatgtaat 31466479  T
Q  124 ggtg 127  Q
    ||||    
T  31466478 ggtg 31466475  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 12105554 - 12105601
Alignment:
Q  384 gacatgcctcaaataaaattatctacttaagattcttaatttttatat 431  Q
    |||||||||||||||||||||   | ||||||||||||||||||||||    
T  12105554 gacatgcctcaaataaaattacacatttaagattcttaatttttatat 12105601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 52878861 - 52878800
Alignment:
Q  371 atattcagtgtctgacatgcctcaaataaaattatctacttaagattcttaatttttatatt 432  Q
    ||||| ||||||||||||||||||||||| |||||  | |||   |||||||||||||||||    
T  52878861 atatttagtgtctgacatgcctcaaataatattattgatttattgttcttaatttttatatt 52878800  T

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