View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11257_low_2 (Length: 353)

Name: NF11257_low_2
Description: NF11257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11257_low_2
NF11257_low_2
[»] chr3 (4 HSPs)
chr3 (7-341)||(32032532-32032866)
chr3 (225-312)||(32025474-32025560)
chr3 (244-312)||(40042460-40042528)
chr3 (279-312)||(47861776-47861809)
[»] chr2 (1 HSPs)
chr2 (6-83)||(717849-717926)
[»] chr8 (2 HSPs)
chr8 (279-312)||(28824835-28824868)
chr8 (279-312)||(38376924-38376957)
[»] chr7 (2 HSPs)
chr7 (279-312)||(33256439-33256472)
chr7 (279-312)||(47942011-47942044)
[»] chr5 (2 HSPs)
chr5 (279-312)||(2600832-2600865)
chr5 (279-312)||(2601550-2601583)
[»] chr4 (1 HSPs)
chr4 (279-312)||(39232821-39232854)
[»] chr1 (2 HSPs)
chr1 (279-312)||(250394-250427)
chr1 (279-312)||(11625286-11625319)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 32032866 - 32032532
Alignment:
Q  7 aaagtttcaaagattttctttctcatatgtttcctatcacaccaaacatataagcccaacaaagaaaacataacaaaatgtaaatttaaaatgaacatat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32032866 aaagtttcaaagattttctttctcatatgtttcctatcacaccaaacatataagcccaacaaagaaaacataacaaaatgtaaatttaaaatgaacatat 32032767  T
Q  107 ggtagataactacaaaggtacaaaatgtaaatttaaaatgagcatctggttgttatgtattggacatgcaaaaatgaaaattcaaactaaacatttggta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32032766 ggtagataactacaaaggtacaaaatgtaaatttaaaatgagcatctggtagttatgtattggacatgcaaaaatgaaaatttaaactaaacatttggta 32032667  T
Q  207 gttacatacaggatatctggtagttatataacagacgtgttattaaggttaaaaatgtaaatttagagggattaaagagatattggggggcctaaaaaga 306  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  32032666 gttacatacaggatgactggtagttatataacagacgtgttattaaggttaaaactgtaaatttagagggattaaagagatattggggggccgaaaaaga 32032567  T
Q  307 aatcttttatttatcttgggataaaaaccagttca 341  Q
    |||||| |||||||||||||| |||||||||||||    
T  32032566 aatcttctatttatcttgggacaaaaaccagttca 32032532  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 32025560 - 32025474
Alignment:
Q  225 ggtagttatataacagacgtgttattaaggttaaaaatgtaaatttagagggattaaagagatattggggggcctaaaaagaaatctt 312  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||| || ||  ||||||||||||   ||| |||||||||||||||    
T  32025560 ggtagttatatatcggacatgttattaaggttaaaaatgtaaattttgaaggcctaaagagatatt-tagggtctaaaaagaaatctt 32025474  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 40042460 - 40042528
Alignment:
Q  244 tgttattaaggttaaaaatgtaaatttagagggattaaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||| |||| |||||||||| ||||| ||| ||||||| ||||  ||||| |||||||||||||||    
T  40042460 tgttattgaggtgaaaaatgtaattttagggggcttaaagatatatgagggggtctaaaaagaaatctt 40042528  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 47861809 - 47861776
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  47861809 taaagagatattggggggcctaaaaagcaatctt 47861776  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 717926 - 717849
Alignment:
Q  6 aaaagtttcaaagattttctttctcatatgtttcctatcacaccaaacatataagcccaacaaagaaaacataacaaa 83  Q
    |||||||||||   || |||| |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  717926 aaaagtttcaagctttctcttcctcatacgtttcctatcacaccaaacatataaacccaacaaagaacacataacaaa 717849  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 28824835 - 28824868
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  28824835 taaagagatattggggggcctaaaaagcaatctt 28824868  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 38376924 - 38376957
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  38376924 taaagagatattggggggcctaaaaagcaatctt 38376957  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 33256439 - 33256472
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  33256439 taaagagatattggggggcctaaaaagcaatctt 33256472  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 47942044 - 47942011
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  47942044 taaagagatattggggggcctaaaaagcaatctt 47942011  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 2600865 - 2600832
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  2600865 taaagagatattggggggcctaaaaagcaatctt 2600832  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 2601550 - 2601583
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  2601550 taaagagatattggggggcctaaaaagcaatctt 2601583  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 39232821 - 39232854
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  39232821 taaagagatattggggggcctaaaaagcaatctt 39232854  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 250394 - 250427
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  250394 taaagagatattggggggcctaaaaagcaatctt 250427  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 11625319 - 11625286
Alignment:
Q  279 taaagagatattggggggcctaaaaagaaatctt 312  Q
    ||||||||||||||||||||||||||| ||||||    
T  11625319 taaagagatattggggggcctaaaaagcaatctt 11625286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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