View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11258_high_1 (Length: 734)

Name: NF11258_high_1
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11258_high_1
NF11258_high_1
[»] chr5 (18 HSPs)
chr5 (1-499)||(43312315-43312813)
chr5 (388-718)||(39475789-39476119)
chr5 (394-718)||(39483546-39483870)
chr5 (394-718)||(39486754-39487078)
chr5 (398-718)||(39451293-39451613)
chr5 (391-718)||(39457855-39458183)
chr5 (395-718)||(39464117-39464440)
chr5 (394-718)||(39460536-39460860)
chr5 (400-542)||(39472325-39472467)
chr5 (84-209)||(39486411-39486536)
chr5 (85-188)||(39454592-39454695)
chr5 (82-206)||(39480323-39480447)
chr5 (84-194)||(39450952-39451062)
chr5 (82-216)||(39458379-39458513)
chr5 (85-209)||(39464626-39464750)
chr5 (388-710)||(39454916-39455232)
chr5 (84-194)||(39475458-39475568)
chr5 (84-188)||(39471988-39472092)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 43312813 - 43312315
Alignment:
Q  1 cgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagnnnnnnnnagttgttgtttaggatgaagaaactagaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  43312813 cgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagttttttttagttgttgtttaggatgaagaaactagaag 43312714  T
Q  101 tggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtctccgtgtaaccgtctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43312713 tggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccgtgtaaccgtctt 43312614  T
Q  201 ggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaactactcatgttccctcc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43312613 ggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaaccactcatgttccctcc 43312514  T
Q  301 acctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcgctgccttcg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312513 acctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcgctgccttcg 43312414  T
Q  401 ttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttga 499  Q
    ||||||||||||||||||||||||||||  |||| || ||||| ||   ||||||| | ||||| | ||||||||| |||||||||| |||||||||||    
T  43312413 ttgttgacatgttctgcaccaccatgattgatgtagctaatgactttggtgtcccttccctcgtctacttcacttccggtgttgctttccttggtttga 43312315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 388 - 718
Target Start/End: Original strand, 39475789 - 39476119
Alignment:
Q  388 ctcgctgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgctt 487  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39475789 ctcgccgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgctt 39475888  T
Q  488 cccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgc 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39475889 cccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgc 39475988  T
Q  588 caaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggc 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39475989 caaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggagtcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggc 39476088  T
Q  688 attatagtaaactcatttgaagagctagaat 718  Q
    |||||||||||||||||||||||||||||||    
T  39476089 attatagtaaactcatttgaagagctagaat 39476119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 394 - 718
Target Start/End: Original strand, 39483546 - 39483870
Alignment:
Q  394 gccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttg 493  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||    
T  39483546 gccttcgttgttgacatgttctgcaccaccatgattgatgttgccaatgagttcaatgtccctacgctcgttttctacactttcagtgttgcttcccttg 39483645  T
Q  494 gtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccc 593  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||   |||| |||| ||||||||||||||| ||||||||    
T  39483646 gtttgaatctttatcttcacactcttcgtgaacgagacaatatcgatttgactcagctgctgcaagagaaagaggcagccatcccgagttttgccaaccc 39483745  T
Q  594 cgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattata 693  Q
    | ||||||||||  ||||||| || ||||||| | |||| ||| ||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39483746 cattccttcaaatccattgcctagctttgtgcgaaacaaagaacgggagccatttttcatgagccttgcaagaggcctcaagaaagtaaatggcattata 39483845  T
Q  694 gtaaactcatttgaagagctagaat 718  Q
    ||||| |||||| ||||||||||||    
T  39483846 gtaaattcattttaagagctagaat 39483870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 394 - 718
Target Start/End: Original strand, 39486754 - 39487078
Alignment:
Q  394 gccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttg 493  Q
    |||||||||||||||||||||||||||||||||||  || ||||||| || ||     ||||| ||||| | ||||||||||| ||||||||||  ||||    
T  39486754 gccttcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttg 39486853  T
Q  494 gtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccc 593  Q
    ||||||  ||  | ||| |||||||   ||||||||||||  ||||||| |||||| |||||| ||||||||||||||||||||| ||||| |||||| |    
T  39486854 gtttgatgctccatcttcacactctgtttgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactc 39486953  T
Q  594 cgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattata 693  Q
      ||||    || || |||||||||||  |||||||||||||||  ||||||||||||||||   ||||  | ||| |||| |||| ||||| |||||||    
T  39486954 gattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattata 39487053  T
Q  694 gtaaactcatttgaagagctagaat 718  Q
    ||||| |||||||||||| ||||||    
T  39487054 gtaaattcatttgaagagttagaat 39487078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 398 - 718
Target Start/End: Original strand, 39451293 - 39451613
Alignment:
Q  398 tcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggttt 497  Q
    |||||||||||||||||||||||||||||||  || ||||||| || ||    || |||| |||||| |||||||||||||| |||||||||||||||||    
T  39451293 tcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggttt 39451392  T
Q  498 gaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccccgtt 597  Q
    ||||||| |  || | || || |||||||||||||| || ||||| |||||| ||| || |||||| ||| |||||||||||| ||||||  ||    ||    
T  39451393 gaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcagcagaaagagttagccatcccgactttcgctcacttgttt 39451492  T
Q  598 ccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaag-aggcctcaagaaagtaaatggcattatagta 696  Q
    |||||||  ||||||||  |||  || |||  ||||||||||||| ||||||||||||| |||   || |||||||||||| |   ||||||||||||||    
T  39451493 ccttcaagctcattgcctggttccgtcctaagcaaggaatgggaaccgtttttcatgag-cttcatagaaggcctcaagaatgccgatggcattatagta 39451591  T
Q  697 aactcatttgaagagctagaat 718  Q
    || |||||||||||||||||||    
T  39451592 aattcatttgaagagctagaat 39451613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 391 - 718
Target Start/End: Complemental strand, 39458183 - 39457855
Alignment:
Q  391 gctgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttccc 490  Q
    ||||| ||| ||||||||||||||||||||||||||||  ||||||  || || ||   ||||||||||||||| ||||||||||| |||||||||| ||    
T  39458183 gctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttcc 39458084  T
Q  491 ttggtttg-aatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgcca 589  Q
    |||||||| |||||| |  || | | | |   |||||||||||| || ||||| |||||| |||||| |||||  ||| | |||||||   ||||||| |    
T  39458083 ttggtttgaaatcttcatattcataatatgtttgaacgagacaacgttgattccactcagttgctgcagcagactgagttggccatccgaggtttcgcta 39457984  T
Q  590 accccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcat 689  Q
    || | |||||||||||  | ||||||||||  ||||||| |||||||||||| || || ||||||||   ||| | ||| |||||||| |   ||| |||    
T  39457983 actcagttccttcaaacactttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgctgatgccat 39457884  T
Q  690 tatagtaaactcatttgaagagctagaat 718  Q
    ||| ||||| |||||||||||||||||||    
T  39457883 tattgtaaattcatttgaagagctagaat 39457855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 395 - 718
Target Start/End: Complemental strand, 39464440 - 39464117
Alignment:
Q  395 ccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttgg 494  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||| || ||    |||||| || | || |||||||||||  ||||||||| ||||||    
T  39464440 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg 39464341  T
Q  495 tttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaacccc 594  Q
    |||||||||| |  || ||||| |   |||||||||||| |||||||| |||||||||  ||  | ||  ||  |  || ||||||||||||| ||| ||    
T  39464340 tttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctggagcaactgactgaattgtccctcccgagtttcgctaactcc 39464241  T
Q  595 gttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattatag 694  Q
    |||||| ||||||| |||||||||   ||  ||| ||||||||  || ||||||||||||||   ||||| |||||||||||| |   ||||  ||||||    
T  39464240 gttcctacaaaatcgttgcccagtgcagtaatacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatag 39464141  T
Q  695 taaactcatttgaagagctagaat 718  Q
    |||| |||||||||||||||||||    
T  39464140 taaattcatttgaagagctagaat 39464117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 394 - 718
Target Start/End: Original strand, 39460536 - 39460860
Alignment:
Q  394 gccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttg 493  Q
    ||||| |||||||||||||||||||| |  |||||  || ||||||| || ||    ||||||||||| || ||||||||||| ||||||||||||||||    
T  39460536 gcctttgttgttgacatgttctgcactaaaatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttg 39460635  T
Q  494 gtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccc 593  Q
    |||  |||||| |  |  |||||||||||||| ||||||| || ||||| | |||| ||| || |||||  ||  | ||||| || | |||||||||| |    
T  39460636 gttcaaatcttcatatccacactcttcgtgaaagagacaacgtagattcaaatcagttgcagcagcagactgaattggccataccaactttcgccaactc 39460735  T
Q  594 cgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagact-tgcaagaggcctcaagaaagtaaatggcattat 692  Q
     ||||||  | | ||  |||||||||   ||||| |||||||||||||||| ||||| |||| ||| |||  | ||||||||||||| |||||| |||||    
T  39460736 ggttcctatatactcgctgcccagttccatgctaaacaaggaatgggaatccttttttatga-actatgctggtggcctcaagaaagcaaatggtattat 39460834  T
Q  693 agtaaactcatttgaagagctagaat 718  Q
    |||||| |||||||||||||||||||    
T  39460835 agtaaattcatttgaagagctagaat 39460860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 39472325 - 39472467
Alignment:
Q  400 gttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttga 499  Q
    |||||||||||||||||||| | ||||||  |||||||||| ||||||  |||||||||||| || ||||||||||| |||||||| | |||||| ||||    
T  39472325 gttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 39472424  T
Q  500 atctttacctttacactcttcgtgaacgagacaatgtcgattc 542  Q
     | || | ||||||||||||||| |||||||||||||| ||||    
T  39472425 gttttcatctttacactcttcgtcaacgagacaatgtctattc 39472467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 39486411 - 39486536
Alignment:
Q  84 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 183  Q
    ||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| ||||| ||||||||  |||||||||||||||||    
T  39486411 gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgt 39486510  T
Q  184 ctccgtgtaaccgtcttggtcatcaa 209  Q
    |||||  ||||| |||||||||||||    
T  39486511 ctccgaataaccatcttggtcatcaa 39486536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 39454592 - 39454695
Alignment:
Q  85 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 184  Q
    |||||||||  |||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| || || |||||  ||||||||||||||||||    
T  39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
Q  185 tccg 188  Q
    ||||    
T  39454692 tccg 39454695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 39480323 - 39480447
Alignment:
Q  82 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 181  Q
    ||||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| || || ||||||||  |||||||||||||||    
T  39480323 aggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc 39480422  T
Q  182 gtctccgtgtaaccgtcttggtcat 206  Q
    |||||||  |||| || ||||||||    
T  39480423 gtctccgaataactgttttggtcat 39480447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 39450952 - 39451062
Alignment:
Q  84 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 183  Q
    ||||||||||  |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || ||||||||  |||| ||||||||||||    
T  39450952 gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt 39451051  T
Q  184 ctccgtgtaac 194  Q
    ||||| |||||    
T  39451052 ctccgagtaac 39451062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 39458513 - 39458379
Alignment:
Q  82 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 181  Q
    ||||||||||||  |||||||||| ||||| |||| || ||||| || ||| |||| |||||||| || ||||| ||||||||  |||||||||||||||    
T  39458513 aggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataacc 39458414  T
Q  182 gtctccgtgtaaccgtcttggtcatcaagtttcca 216  Q
    |||||||  ||||  |||||||||| || ||||||    
T  39458413 gtctccgaataactatcttggtcatgaaatttcca 39458379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 39464750 - 39464626
Alignment:
Q  85 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 184  Q
    |||||||||  |||||| ||||||||||||| ||| | ||| || ||| |||| ||  ||||||||||||| ||||||||  ||||||||||||||||||    
T  39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 39464651  T
Q  185 tccgtgtaaccgtcttggtcatcaa 209  Q
    ||||  ||||| |||| ||||||||    
T  39464650 tccgaataaccatcttagtcatcaa 39464626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 388 - 710
Target Start/End: Original strand, 39454916 - 39455232
Alignment:
Q  388 ctcgctgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgctt 487  Q
    ||||| || |||||||||||||||| ||||||  |||||||  |||||||||| ||||||    ||||||| ||||| |||||||||||  |||| ||||    
T  39454916 ctcgcagctttcgttgttgacatgtcctgcacagccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagtgtagctt 39455015  T
Q  488 cccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgc 587  Q
     ||||||||||| ||| || ||| ||| | |   |||||      | || ||||| |||||| |||||| |||||||||| ||||||| |||| |||| |    
T  39455016 tccttggtttgactctctatcttcacaatatgtttgaac------aagtagattcaactcagttgctgcagcagaacgagttagccattccgactttcac 39455109  T
Q  588 caaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggc 687  Q
    |||     |||||||||| ||||||||  |||   |||||  |||||||||| || || |||||| |||   |||||||||||||||||| |   ||||     
T  39455110 caatttgtttccttcaaactcattgccacgttccctgctaagcaaggaatggaaaccggttttcaagagctatgcaagaggcctcaagaatgccgatgga 39455209  T
Q  688 attatagtaaactcatttgaaga 710  Q
    || |||||||| |||||||||||    
T  39455210 atcatagtaaattcatttgaaga 39455232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 39475458 - 39475568
Alignment:
Q  84 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 183  Q
    ||||||||||  |||||||||||||||||||| ||| ||| || | ||| || | ||||| ||||||||||  ||||||||  |||| ||||||||||||    
T  39475458 gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt 39475557  T
Q  184 ctccgtgtaac 194  Q
    ||||| |||||    
T  39475558 ctccgagtaac 39475568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 39471988 - 39472092
Alignment:
Q  84 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 183  Q
    ||||||||||  ||||||||||||| |||||| ||| | || ||| ||| |||| ||  | || |||||||| ||||||||  |||||||||||||||||    
T  39471988 gatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt 39472087  T
Q  184 ctccg 188  Q
    |||||    
T  39472088 ctccg 39472092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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