View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11258_high_6 (Length: 367)
Name: NF11258_high_6
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 249010 - 248676
Alignment:
| Q |
15 |
acagacagagagggagcatacaaattagatataccatcagtggatggaactaactgtaaaattgccatggatggtaattcacagattgtgtctctctgcc |
114 |
Q |
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| T |
249010 |
acagacagagagggagcatacaaattagatataccatcagtggatggaactaactgtaaaattgccatggatggtaattcacagattgtgtctctctgcc |
248911 |
T |
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| Q |
115 |
aagcaaccttgataggaacttcatcatcttcttattcttgcaatgttcctttcttgaagagcacaggaagtagtcagatattaaaacaagagaataacct |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
248910 |
aagcaagcttgataggaacttcatcatcttcttattcttgcaatgttcctttcttgaagagcacaggaagtagtcagatattaaaacaagagaataacct |
248811 |
T |
|
| Q |
215 |
atgtgtatacagcttgggagctcttagttacaagccacctcaaaatatgatcaatactaccttatgctcaaattaattcatttggattttaatttcttcc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
248810 |
atgtgtatacagcttgggagctcttagttacaagccacctcaaaatatgatcaatactaccttatgctcaaattaattcatttggattttaatttcttct |
248711 |
T |
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| Q |
315 |
gaggtattgtccactttagatattatagaaacttc |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
248710 |
gaggtattgtccactttagatattatagaaacttc |
248676 |
T |
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