View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11258_low_10 (Length: 343)
Name: NF11258_low_10
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 10981304 - 10981629
Alignment:
| Q |
1 |
tatgttgggtcccggcacacctcggaatggctcaatacagcaggaagaaatgttaagacaggactcattgctagtgtcatagtgtctcaggtggtagatt |
100 |
Q |
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| T |
10981304 |
tatgttgggtcccggcacacctcggaatggttcaatacagcaggaagaaatgttaagacaggactcattgctagtgtcatagtgtctcaggtgatagatt |
10981403 |
T |
|
| Q |
101 |
cgacagtctcttattccacacttttacaaacctcaaattagttacattttcttatcccttatcttaacattctatttgtttgttctgaagtggacttggg |
200 |
Q |
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| T |
10981404 |
caacagtctcttattccacacttttacaaacctcaaattagttacattttcttatcccttatcttaacattctatttgtttgttctgaagtggacttggg |
10981503 |
T |
|
| Q |
201 |
ctgctacaatcctgcaaagctctaatgttgcttgggagtacggggttagtggacctttctggtatgctagtggagctaccatccaggtaaggagtttata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10981504 |
ctgctacaatcctgcaaagctctaatgttgcttgggagtacggggttagtggacctttctggtatgctagtggagctaccatccaggtaaggagtttata |
10981603 |
T |
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| Q |
301 |
ttataaggctaagatatgtaaagttt |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10981604 |
ttataaggctaagatatgtaaagttt |
10981629 |
T |
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