View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11258_low_11 (Length: 340)

Name: NF11258_low_11
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11258_low_11
NF11258_low_11
[»] chr5 (7 HSPs)
chr5 (1-329)||(29711578-29711917)
chr5 (1-119)||(29696821-29696940)
chr5 (1-119)||(29688711-29688827)
chr5 (156-207)||(29688941-29688992)
chr5 (288-329)||(29697220-29697261)
chr5 (72-117)||(9120420-9120465)
chr5 (122-158)||(29688846-29688882)
[»] chr4 (8 HSPs)
chr4 (156-209)||(48734629-48734682)
chr4 (54-117)||(48871196-48871259)
chr4 (54-117)||(48876500-48876563)
chr4 (54-117)||(48886882-48886945)
chr4 (155-208)||(48871410-48871463)
chr4 (155-208)||(48876714-48876767)
chr4 (162-199)||(49058043-49058080)
chr4 (58-111)||(50669722-50669775)
[»] chr8 (1 HSPs)
chr8 (156-204)||(4029986-4030034)
[»] chr1 (1 HSPs)
chr1 (156-208)||(24381873-24381925)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 29711917 - 29711578
Alignment:
Q  1 gttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaagctaagaagatgaaacgaataagaagaacgaggtcttgaagtattctcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29711917 gttatgtatacagaatctctgctttcaattcctgatggtgacagtggtcaagctaagaagatgaaacgaataagaagaacgaggtcttgaagtattctcc 29711818  T
Q  101 ttcaccattttcgtgatctacatgtactcttgggtggctgcattcgtaggttaatatgaagtgtttattggttaaacatttgtaatatgtttattgaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  29711817 ttcaccattttcgtgatctacatgtactcttgggtggctgcattcgtaggttaatatggagtgtttattggttaaacatttgtaatatgcttattgaaaa 29711718  T
Q  201 tgttgacagc-nnnnnnngtgtgaatcactg----tagttagtgtatatttgtggtcactggttgtaattgttttatattttcattgatt------gttt 289  Q
    ||||||||||        |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  29711717 tgttgacagcttttttttgtgtgaatcactgtatatagttagtgtatatttgtggtcactggttgtaattgttttatattttcattgatttgatgagttt 29711618  T
Q  290 atgcatgttgatcaagatcaaaatcccattctcatttcat 329  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29711617 atgcatgttgatcaagatcaaaatcccattctcatttcat 29711578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 29696821 - 29696940
Alignment:
Q  1 gttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaag-ctaagaagatgaaacgaataagaagaacgaggtcttgaagtattctc 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||| |  |  |||||||| ||||| ||||||||||||     
T  29696821 gttatgtatacagaatctctgctttcaattcctggtggtgacagtggtcaagtttaagaagatgacagaaccaagaagaatgaggttttgaagtattctt 29696920  T
Q  100 cttcaccattttcgtgatct 119  Q
    ||||||||||||| ||||||    
T  29696921 cttcaccattttcatgatct 29696940  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 29688711 - 29688827
Alignment:
Q  1 gttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaagc-taagaagatgaaacgaataagaagaacgaggtcttgaagtattctc 99  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||| ||| || ||||||||||  ||| |  | ||||| ||||| || |||||||| |    
T  29688711 gttatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatg--acgca-gacaagaatgaggttttcaagtattccc 29688807  T
Q  100 cttcaccattttcgtgatct 119  Q
    ||||||||||||| ||||||    
T  29688808 cttcaccattttcatgatct 29688827  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 29688941 - 29688992
Alignment:
Q  156 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgac 207  Q
    ||||| ||||||||||| ||||||||||| | ||||||||||||||||||||    
T  29688941 atgaaatgtttattggtcaaacatttgtattgtgtttattgaaaatgttgac 29688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 29697220 - 29697261
Alignment:
Q  288 ttatgcatgttgatcaagatcaaaatcccattctcatttcat 329  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  29697220 ttatgcatgttgatcaatatcaaaatctcattctcatttcat 29697261  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 9120420 - 9120465
Alignment:
Q  72 aagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 117  Q
    |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  9120420 aagaagaatgaggttttgaaatattctccttcaccattttcttgat 9120465  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 29688846 - 29688882
Alignment:
Q  122 atgtactcttgggtggctgcattcgtaggttaatatg 158  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  29688846 atgtactcttgagtggctgcattcgtagggtaatatg 29688882  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 48734682 - 48734629
Alignment:
Q  156 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgacag 209  Q
    ||||| |||||||| || ||||||||||||||||||||| |||| |||||||||    
T  48734682 atgaaatgtttattagtcaaacatttgtaatatgtttatcgaaattgttgacag 48734629  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 48871196 - 48871259
Alignment:
Q  54 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 117  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48871196 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48871259  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 48876500 - 48876563
Alignment:
Q  54 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 117  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48876500 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48876563  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 48886882 - 48886945
Alignment:
Q  54 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 117  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48886882 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48886945  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 48871410 - 48871463
Alignment:
Q  155 tatgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 208  Q
    |||||| ||||||||| |||   |||| ||||||||||||||||||||||||||    
T  48871410 tatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgaca 48871463  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 48876714 - 48876767
Alignment:
Q  155 tatgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 208  Q
    |||||| ||||||||| |||   |||| ||||||||||||||||||||||||||    
T  48876714 tatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgaca 48876767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 49058080 - 49058043
Alignment:
Q  162 tgtttattggttaaacatttgtaatatgtttattgaaa 199  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  49058080 tgtttattggtcaaacacttgtaatatgtttattgaaa 49058043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 50669722 - 50669775
Alignment:
Q  58 aagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccatttt 111  Q
    ||||||| || || ||||||||| |||| ||||| |||||||||||||||||||    
T  50669722 aagatgacacaaacaagaagaacaaggttttgaaatattctccttcaccatttt 50669775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 4030034 - 4029986
Alignment:
Q  156 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgtt 204  Q
    ||||| || |||||| |||| |||||| |||||||||||||||||||||    
T  4030034 atgaaatggttattgattaatcatttggaatatgtttattgaaaatgtt 4029986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 24381873 - 24381925
Alignment:
Q  156 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttgaca 208  Q
    ||||| ||||||||||||||  |||||||| |||||||||| |||| ||||||    
T  24381873 atgaaatgtttattggttaactatttgtaacatgtttattggaaatattgaca 24381925  T

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