View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11258_low_12 (Length: 319)

Name: NF11258_low_12
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11258_low_12
NF11258_low_12
[»] chr4 (1 HSPs)
chr4 (16-319)||(27694852-27695155)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 27695155 - 27694852
Alignment:
Q  16 gttaatatattataatatgtataatatgtttttctgtgagaagttgctgaacaattgaataaagcatactggttgagtccaaattcgtaattgaactgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27695155 gttaatatattataatatgtataatatgtttttctgtgagaagttgctgaacaattgaataaagcatactggttgagtccaaattcgtaattgaactgaa 27695056  T
Q  116 aaggtgatgaggatatgttgaagttaggaatctgtttgtgaaggcagaattcaggataagatactgttataatttgtgaagtgtagtttatggttttgac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27695055 aaggtgatgaggatatgttgaagttaggaatctgtttgtgaaggcagaattcaggataagatactgttataatttgtgaagtgtagtttatggttttgag 27694956  T
Q  216 gatggttttcgaagagaagggaagctctaacaccgtttggttggtgtcggtgcagtatagttcataccaggaatcattgtggccacaccattgtggctgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27694955 gatggttttcgaagagaagggaagctctaacaccgtttggttggtgtcggtgcagtatagttcataccaggaatcattgtggccacaccattgtggctgt 27694856  T
Q  316 cttc 319  Q
    ||||    
T  27694855 cttc 27694852  T

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