View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11258_low_14 (Length: 263)
Name: NF11258_low_14
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 8645961 - 8645707
Alignment:
| Q |
1 |
ttatcggaagattcatattgctcttctttctgaaactcttcaatcaattcccgctgtctatctgtcaggtttctggaacgatacagagaaacaaacattg |
100 |
Q |
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| T |
8645961 |
ttatcggaagattcatattgctcttctttctgaaactcttcaatcaattcccgctgtctatctgtcaggtttctggaacgatacagagaaacaaacattt |
8645862 |
T |
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| Q |
101 |
aaatatcaagcatacagaagtatcatacatatgagtactgcaagaaaaacaactatttcctgcacatttgtatcgacagcccagacccgtcgaaattttt |
200 |
Q |
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| T |
8645861 |
aaatatcaagcatacagaagtatcatacatatgagtactgcaagaaaaacaactatttcctgcacatttgtatcgacagcccagacccgtcgaaattttt |
8645762 |
T |
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| Q |
201 |
acacgtttcgacgggaatttccttcagtgccggctgaaacttactaattcatctc |
255 |
Q |
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| T |
8645761 |
acacgtttcgacgggaatttccttcagtgccggctgaaacttactaattcatctc |
8645707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 7930906 - 7930864
Alignment:
| Q |
33 |
aaactcttcaatcaattcccgctgtctatctgtcaggtttctg |
75 |
Q |
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| T |
7930906 |
aaactcttcgatcaattcacgctgtctttctgtcaggtttctg |
7930864 |
T |
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