View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11258_low_2 (Length: 541)
Name: NF11258_low_2
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 24564073 - 24564579
Alignment:
| Q |
18 |
aggaagtaagatgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctctattgcaaagcaagaaaccaaaga |
117 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24564073 |
aggaagtaagatgtatctcatcatcatttatgtgtgatcaccgttaaaaatcattttcatcatcttccaatcgctctattgcaaagcaagaaaccaaaga |
24564172 |
T |
|
| Q |
118 |
gaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564173 |
gaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttg |
24564272 |
T |
|
| Q |
218 |
ttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtata |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564273 |
ttacaacaaaaaaa-tcaatgtgattaagacatgaaatgatcgttgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtata |
24564371 |
T |
|
| Q |
318 |
tttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24564372 |
tttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattggcatgtataaagcatcggaatatacacagagacactaacatct |
24564471 |
T |
|
| Q |
418 |
gaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaac |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||| |
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| T |
24564472 |
gaacaccgacaattattttaaaaaataatataattcaatgtaatcacatgtatctatattttgtaggcgacgaatacgggaacgtatcagacacc-aaac |
24564570 |
T |
|
| Q |
518 |
acgcctatg |
526 |
Q |
| |
|
||||||||| |
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|
| T |
24564571 |
acgcctatg |
24564579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 97 - 452
Target Start/End: Complemental strand, 45535313 - 45534957
Alignment:
| Q |
97 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagta |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||| |||||||||||||| ||||||||| |||||| |
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| T |
45535313 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagcggggtaaaatgtagctaatggataaaagaaagttttaattctgaaagtaatagtt |
45535214 |
T |
|
| Q |
197 |
aattacttcaacgtgactttgttacaacnnnnnnnn-tcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
295 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||| |||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
45535213 |
aattaaatcaatgtgactttgttacaacaaaaaaaaatcaatgcgattaagagatgtaatgatcattgcagttgagaaaggccatacggccccttaactt |
45535114 |
T |
|
| Q |
296 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaat |
395 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||| | | || |
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|
| T |
45535113 |
agctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtgtattagcatgtataaagcaacaacat |
45535014 |
T |
|
| Q |
396 |
atacacagagacactaacatctgaacaccgacaattattttaaaaaataatataatt |
452 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |
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|
| T |
45535013 |
atacatagagacactaacatgtgaacactgataattattttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 96 - 477
Target Start/End: Original strand, 44338195 - 44338572
Alignment:
| Q |
96 |
ttgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagt |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||| | || |||| |||||||||||||||||||||||| | |
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|
| T |
44338195 |
ttgcaaagcaagaaatcaaagagaaggcaatat--gaacatgaagtagggtaaaaagtaggtaattgataaaataaagttttatttctgaaagcaataat |
44338292 |
T |
|
| Q |
196 |
aaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
295 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||| |||| ||| |||||||| ||||||| |||||||||||||||| |||||| || |
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|
| T |
44338293 |
aaattaaatcaacgtgactttgt---aaccaaaaaaacaaatgtgatcaagagatgtaatgatcactgcagttcagaaaggccatatggctccttaaatt |
44338389 |
T |
|
| Q |
296 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatg-aatatggtttgg-aatgggtattaaatgtattagcatgtataaagaatcgga |
393 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||||||||| |||||| || |||||| || ||||| ||||||||||||||||||||||||| ||| |
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|
| T |
44338390 |
agttgactaatttaaaggtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataaaacgtcgac |
44338489 |
T |
|
| Q |
394 |
atatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatc |
477 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |||||||| ||| | |||||| | |||| |||||||||| ||||||||||||| |
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|
| T |
44338490 |
atatacccagagacattaacatgtgaacaaagacaatta-tttgagaaataacacaattaaatataatcatatgtatctatatc |
44338572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 45535665 - 45535593
Alignment:
| Q |
19 |
ggaagtaagatgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgct |
92 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45535665 |
ggaagtaagacgtatctcaccatcatttatgtgtgttcac-gttaaaaatcattttcaccatcttccaatcgct |
45535593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 44337903 - 44337971
Alignment:
| Q |
26 |
agatgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctct |
94 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||| ||||| |
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|
| T |
44337903 |
agatgtatctcaccataatttatgtatgatcatcgttagaaatcattttcaccatcttccaattgctct |
44337971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
435 |
ttaaaaaataatataattcaatataatcacatgtatc |
471 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
419 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
468 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 9e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 243 - 526
Target Start/End: Original strand, 9800524 - 9800805
Alignment:
| Q |
243 |
taagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatg |
342 |
Q |
| |
|
|||| |||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
9800524 |
taagccatgtaatgatcattgcaattcaaaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatg |
9800623 |
T |
|
| Q |
343 |
aatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaa |
442 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
9800624 |
aatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaa |
9800722 |
T |
|
| Q |
443 |
taatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatg |
526 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| || | ||||||| ||||| ||| | ||||| ||||||||||||| |
|
|
| T |
9800723 |
taatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatg |
9800805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 9798992 - 9799190
Alignment:
| Q |
28 |
atgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctc-tattgcaaagcaagaaaccaaagagaaggcaat |
126 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||| |
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|
| T |
9798992 |
atgtatcttaccatcatttatgtgtgattaccgttaaagatccttttcaccatcttccggtcgctcatattgcaaagcaagataccaaagagaaagcaac |
9799091 |
T |
|
| Q |
127 |
atatgaacatgaagt--ggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaa |
223 |
Q |
| |
|
|||||||||||||| |||||||||| ||| || |||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
9799092 |
atatgaacatgaagccgggggtaaaatgtagctactggatgaaagaaagatttatttctgaaagcaacagtaaattaaatcaacgtgactttgttacaa |
9799190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
432 |
attttaaaaaataatataattcaatataatcacatgtatct |
472 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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