View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11258_low_4 (Length: 420)
Name: NF11258_low_4
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 4749248 - 4748856
Alignment:
| Q |
15 |
agatgaataaatgagtatataatt---taccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
111 |
Q |
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| T |
4749248 |
agatgaataaatgagtatataattaattaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
4749149 |
T |
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| Q |
112 |
atgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtctctttga |
211 |
Q |
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| T |
4749148 |
atgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaactttttggcctctttga |
4749049 |
T |
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| Q |
212 |
gaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaattcgtgaccatttat |
311 |
Q |
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| T |
4749048 |
gaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaattcgtgaccatttat |
4748949 |
T |
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| Q |
312 |
tggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagg |
404 |
Q |
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| T |
4748948 |
tggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagg |
4748856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 382
Target Start/End: Complemental strand, 4757058 - 4756713
Alignment:
| Q |
40 |
accttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggt |
139 |
Q |
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| T |
4757058 |
accttgagtgctttatggaatgcaaatccagtgagattgatggcgagtgatttcattcccttaagcaaatcaatgtacaaattttcaaccaaaccaaggt |
4756959 |
T |
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| Q |
140 |
cagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtctctttgagaaactcaaccggtgtgttcgttttaga |
239 |
Q |
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| T |
4756958 |
ccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttaga |
4756859 |
T |
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| Q |
240 |
cgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---ttcgtgaccatttattggagacgtggttacctttcgcaaa |
336 |
Q |
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| T |
4756858 |
caactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaa |
4756759 |
T |
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| Q |
337 |
cgtttatgctcggcacttgatattccatggaatgattttttccctg |
382 |
Q |
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| T |
4756758 |
cgtttgtgttcagaatttgagattccatggaatgatcttttacctg |
4756713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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