View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11258_low_5 (Length: 410)
Name: NF11258_low_5
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 23 - 402
Target Start/End: Complemental strand, 28184403 - 28184024
Alignment:
| Q |
23 |
atggtttcaagggatctgaaattgctatggcttcttattgctctgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaaca |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184403 |
atggtttcaagggatctgaaattgctatggcttcttattgctccgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaaca |
28184304 |
T |
|
| Q |
123 |
caaccaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184303 |
caaccaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctt |
28184204 |
T |
|
| Q |
223 |
tgccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184203 |
tgccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtca |
28184104 |
T |
|
| Q |
323 |
atggagaacttcatccttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgct |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184103 |
atggagaacttcatccttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgct |
28184024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 42609739 - 42609660
Alignment:
| Q |
73 |
caatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaacacaaccaagacgttaactctttgggtttgat |
152 |
Q |
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| T |
42609739 |
caataccttgctagtcctgtcaccactcatgtccaaagtgctgaacaacataaccaagatgttaactctttaggcttgat |
42609660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 42609542 - 42609438
Alignment:
| Q |
270 |
tgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaatggagaacttcatccttcaagattttgcgagaaagatttgctcaaa |
369 |
Q |
| |
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|||||||||||||||||| ||||| || ||||||| || ||| ||||||||||| || | ||||| ||||| ||||| ||||| ||||| ||||| |
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| T |
42609542 |
tgtcaagaacactgtaagtcaagtagccaagagaattctaacagttggtgtcaatggtgagttgcatccatcaaggttttgtgagaaggatttactcaat |
42609443 |
T |
|
| Q |
370 |
gttgt |
374 |
Q |
| |
|
||||| |
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| T |
42609442 |
gttgt |
42609438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 359
Target Start/End: Original strand, 40945016 - 40945352
Alignment:
| Q |
23 |
atggtttcaagggatctgaaattgctatggcttcttattgctctgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaaca |
122 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||||| |||||||| ||||||||||| || || || || ||||| || |||||||| ||||| || |
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| T |
40945016 |
atggtttcaagggagctgaaattgccatggcttcctattgttctgagttgcaatatcttgcaaatccggttacaacccacgtccaaagtgccgagcagca |
40945115 |
T |
|
| Q |
123 |
caaccaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctt |
222 |
Q |
| |
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||||||||| || ||||||||||||||||||||||| ||||||||| | || || ||||||||| | | |||||||||||||| |||||||| || ||| |
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| T |
40945116 |
caaccaagatgtgaactctttgggtttgatttcttcgagaaaaacatatgaagccattgagatccttcaactcatgtcttccacattcttgattgctctt |
40945215 |
T |
|
| Q |
223 |
tgccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtca |
322 |
Q |
| |
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|||||||||||||| || || |||||||| ||||| |||| ||| | ||||||||||| ||||| ||||| || || | || || || | || || | |
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| T |
40945216 |
tgccaagcaattgatttaagacatttggaggagaacttgaaaaactcagtcaagaacaccgtaagtcaagtcgccaaaaagacccttaccataggcgtga |
40945315 |
T |
|
| Q |
323 |
atggagaacttcatccttcaagattttgcgagaaaga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |
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|
| T |
40945316 |
atggagaacttcatccttcaagattttgtgaaaaaga |
40945352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 347
Target Start/End: Original strand, 40958981 - 40959305
Alignment:
| Q |
23 |
atggtttcaagggatctgaaattgctatggcttcttattgctctgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaaca |
122 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||||| |||||||| ||||||||||| || || || || ||||| || |||||||| ||||| || |
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| T |
40958981 |
atggtttcaagggagctgaaattgccatggcttcctattgttctgagttgcaatatcttgcaaatccggttacaacccacgtccaaagtgccgagcagca |
40959080 |
T |
|
| Q |
123 |
caaccaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctt |
222 |
Q |
| |
|
||||||||| || |||||||||||||||||||| || ||||||||| | || || ||||||||| | | |||||||||||||| |||||||| || ||| |
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| T |
40959081 |
caaccaagatgtgaactctttgggtttgatttcatcaagaaaaacatatgaagccattgagatccttcaactcatgtcttccacattcttgattgcactt |
40959180 |
T |
|
| Q |
223 |
tgccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtca |
322 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||| |||| ||| | ||||||||||| ||||| ||||| || || | || || || | || || | |
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| T |
40959181 |
tgccaagcaattgatttaagacatttggaggagaacttgaaaaactcagtcaagaacaccgtaagtcaagtagccaaaaagacccttaccataggagtaa |
40959280 |
T |
|
| Q |
323 |
atggagaacttcatccttcaagatt |
347 |
Q |
| |
|
||||||||||||| ||||||||||| |
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| T |
40959281 |
atggagaacttcaaccttcaagatt |
40959305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 288
Target Start/End: Original strand, 43216763 - 43217028
Alignment:
| Q |
23 |
atggtttcaagggatctgaaattgctatggcttcttattgctctgagttacaatatcttgctaaccctgtcaccacccatgtgcaaagtgctgagcaaca |
122 |
Q |
| |
|
||||||| |||| |||||| |||| |||||| ||||||| ||||| | |||||| | || || ||||| || | |||||||||||||||||||| || |
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| T |
43216763 |
atggttttaaggcctctgaagttgccatggctgcttattgttctgaacttcaatatttagcaaatcctgtgacaagtcatgtgcaaagtgctgagcagca |
43216862 |
T |
|
| Q |
123 |
caaccaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctt |
222 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| ||| |||||| || || |||||||| || ||||||||||||||||| | ||| | || || |
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|
| T |
43216863 |
caaccaagatgtgaactctttggggttgatttctgctatgaaaacagtggaagccattgagatattgaagctcatgtcttccacatatttggttgcactc |
43216962 |
T |
|
| Q |
223 |
tgccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagc |
288 |
Q |
| |
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|||||||| |||||||||||||||||||| || | ||| | |||| |||||||||| ||||||||| |
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|
| T |
43216963 |
tgccaagctattgacttgaggcatttggaggaaattttcaagaactctgtcaagaaaactgtaagc |
43217028 |
T |
|
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