View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11258_low_7 (Length: 367)
Name: NF11258_low_7
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 2926355 - 2926028
Alignment:
| Q |
16 |
aacaaccttttcagggaacatgtagaaacaattgtgggctatattttccttttcgatgtcatagtcccaaatgaaaatgttacttcccaaggggatgaca |
115 |
Q |
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| T |
2926355 |
aacaaccttttcagggaacatgtagaaacaattgtgggctatattttccttttcgatgtcatagtcccaaatgaaaatgttacttcccaaggggatgaca |
2926256 |
T |
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| Q |
116 |
tataatttgttaaaatcgagcacaaggctattacaagaaagaggggcataattgaggagtgggtggaagaattcagtttggccacacgtgctttggctaa |
215 |
Q |
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| T |
2926255 |
tataatttgttaaaatcaagcacaagactattacaagaaagaggggcataattgaggagtgggtggaagaattgagtttggccacgcgtattttggctaa |
2926156 |
T |
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| Q |
216 |
ctcttatcaaccaaggaaaaagtagggtttgttcttgttgttgttgtggtagagattttgtttggagatcaggtgacataatgaagggttgttgccgttg |
315 |
Q |
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| T |
2926155 |
ctcttatcaaccaagggaaaagtagggtttgttcttgttgtttttgtggtagagattttgtttggag---aggtgacagagtgaagggttgttgccgttg |
2926059 |
T |
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| Q |
316 |
atggtatctatgtcatccgggttagagagga |
346 |
Q |
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| T |
2926058 |
atggtatctatgtcattcgggttagagagga |
2926028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 265
Target Start/End: Original strand, 7041992 - 7042172
Alignment:
| Q |
85 |
aatgaaaatgttacttcccaaggggatgacatataatttgttaaaatcgagcacaaggctattacaagaaagaggggcataattgaggagtgggtggaag |
184 |
Q |
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| T |
7041992 |
aatgaaattgttgcttcccaaatggaggacagataatttgttgaaatcgagcacaagacggatacgaggaagagggtagtgatggaagagtgggtggaat |
7042091 |
T |
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| Q |
185 |
aattcagtttggccacacgtgctttggctaactcttatcaaccaaggaaaaagtagggtttgttcttgttgttgttgtggt |
265 |
Q |
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| T |
7042092 |
aattgggtttggccacgcgtgttttggcaaactcttatcaaccaagggcgaagtagagtttgttgttgttgttgttgtggt |
7042172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 7047426 - 7047514
Alignment:
| Q |
173 |
agtgggtggaagaattcagtttggccacacgtgctttggctaactcttatcaaccaaggaaaaagtagggtttgttcttgttgttgttg |
261 |
Q |
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| T |
7047426 |
agtgggtggaaaaatcgagttttgccacgcgtgttttggctaactcttatcaaccaagggcgaagtagggtttgttgttcttgttgttg |
7047514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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