View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11258_low_8 (Length: 363)
Name: NF11258_low_8
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 4 - 345
Target Start/End: Original strand, 8646114 - 8646455
Alignment:
| Q |
4 |
cccctccacttttgagtatatgtaatattatctcgtcataagagatactcactaattctcaattaatttataaggttagaagacagtccttcatgcacct |
103 |
Q |
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| T |
8646114 |
cccctccacttttgagtatatgtaatattatctcgtcataagagatactcactaattctcaattaatttataaggttagaagacagtccttcatgcacct |
8646213 |
T |
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| Q |
104 |
gatgcagtatcctagtctgtgttgtatataatattcattaacataaaggggtgcaagtcatgaattgacattctttttgcttttatcataagtggaggaa |
203 |
Q |
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| T |
8646214 |
gatgcagtatcctagtctgtgttgtatataatattcattaacataaaggggtgcaagtcatgaattgacattctttttgcttttatcataagtggaggaa |
8646313 |
T |
|
| Q |
204 |
ccttgataaattatatttgatcatgatggacaaactagttgacaatttctgcatcaatacagaaagatcatatatttatattttcttgattagtataatg |
303 |
Q |
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| T |
8646314 |
ccttgataaattatattggatcatgatggacaaactagttgacaatttctgcatcaatacagaaagatcatatatttatattttcttgattagtataatg |
8646413 |
T |
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| Q |
304 |
atgttcatttggactggtgatgaatatttggatcagtgtagt |
345 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8646414 |
atgttcttttggactggtgatgaatatttggatcagtgtagt |
8646455 |
T |
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