View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11258_low_9 (Length: 346)
Name: NF11258_low_9
Description: NF11258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11258_low_9 |
 | |
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| [»] chr5 (13 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 39475472 - 39475817
Alignment:
| Q |
1 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39475472 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagtaactgt |
39475571 |
T |
|
| Q |
101 |
tttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475572 |
tttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttct |
39475671 |
T |
|
| Q |
201 |
cttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39475672 |
cttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagag |
39475771 |
T |
|
| Q |
301 |
aaggacaacatggacacctcgccgccttcgttgttgacatgttctg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475772 |
aaggacaacatggacacctcgccgccttcgttgttgacatgttctg |
39475817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 39450966 - 39451311
Alignment:
| Q |
1 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||| ||||||| ||||| || | ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39450966 |
aagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgtctccgagtaactgt |
39451065 |
T |
|
| Q |
101 |
tttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttct |
200 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39451066 |
tttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttct |
39451165 |
T |
|
| Q |
201 |
cttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagag |
300 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||| || |||||||| || || |||||||||||| ||| |
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|
| T |
39451166 |
cttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggag |
39451265 |
T |
|
| Q |
301 |
aaggacaacatggacacctcgccgccttcgttgttgacatgttctg |
346 |
Q |
| |
|
|||| || ||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
39451266 |
gaggagaaaatggagtcctcgccaccatcgttgttgacatgttctg |
39451311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 51 - 276
Target Start/End: Original strand, 39472052 - 39472274
Alignment:
| Q |
51 |
gagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaat |
150 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
39472052 |
gagtttgcgaagcttctaatcaaccgtgataaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaat |
39472151 |
T |
|
| Q |
151 |
cccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcga |
250 |
Q |
| |
|
||||||||||||| || || ||| |||||||||||||||||||| ||||||| |||||||||| |||| |||| |||| ||||| || |||||||| |
|
|
| T |
39472152 |
cccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctct---atgactgcgctcctcga |
39472248 |
T |
|
| Q |
251 |
agctcagaaaccaaacgtaaaacaag |
276 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
39472249 |
agctcagaaaccaaacgtcaaacaag |
39472274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 346
Target Start/End: Original strand, 39486457 - 39486776
Alignment:
| Q |
33 |
catctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgttttagttatcaaattcccacacataacagaaa |
132 |
Q |
| |
|
|||||| ||||||| ||||| |||| |||||||||||||| |||||||||||||||||| ||| | || || |||||||||||||||| ||||| |
|
|
| T |
39486457 |
catctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataaccatcttggtcatcaaattcccacacaccacagatg |
39486556 |
T |
|
| Q |
133 |
atgatgtcaa------cactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggttt |
226 |
Q |
| |
|
| |||||| | ||| ||||||||||| || || || |||||| | ||||||||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
39486557 |
acgatgtcgatgtctacacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttt |
39486656 |
T |
|
| Q |
227 |
ctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggaca---acatggacacctcgcc |
323 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||| ||| |
|
|
| T |
39486657 |
---tgtcatgaacgctctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctcactactagagaaggacaaccacctggacaccttgcc |
39486753 |
T |
|
| Q |
324 |
gccttcgttgttgacatgttctg |
346 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39486754 |
gccttcgttgttgacatgttctg |
39486776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 346
Target Start/End: Original strand, 39483405 - 39483568
Alignment:
| Q |
180 |
atcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctg |
279 |
Q |
| |
|
||||||||||||||| || ||||||||||||| ||||| || || || |||| | |||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
39483405 |
atcaaccttccagaatgttatcttcccccaaacttcgatctagttt---ctgccatcaacgctctccttgaagctcagaaaccaaacataatacaagctg |
39483501 |
T |
|
| Q |
280 |
tctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatgttctg |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39483502 |
tctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgacatgttctg |
39483568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 39470960 - 39470621
Alignment:
| Q |
1 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | | | |||||| |||| | | ||||| | |||||||||||||| | ||||||||| ||| || |||||| |
|
|
| T |
39470960 |
aagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataaccgcctctgaataactgt |
39470861 |
T |
|
| Q |
101 |
tttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttct |
200 |
Q |
| |
|
||||| || ||||||||||||| ||||| ||||||| || |||||||| |||| ||||| || |||||| | ||||||||||||||||||||||| |
|
|
| T |
39470860 |
cttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttct |
39470761 |
T |
|
| Q |
201 |
cttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagag |
300 |
Q |
| |
|
||| ||||| | | |||||||||| | |||| ||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
39470760 |
gttctcccaacctctgatccaggttcggat---atgaacgctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggag |
39470664 |
T |
|
| Q |
301 |
aaggacaacatggacacctcgccgccttcgttgttgacatgttctg |
346 |
Q |
| |
|
| ||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
39470663 |
a---acaacatggacccctcgccgctgtcattgttgacatgttctg |
39470621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 39454605 - 39454897
Alignment:
| Q |
1 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgt |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||| | ||||| || ||||||| |||||||| | ||| ||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
39454605 |
aagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtctccgaataactgt |
39454704 |
T |
|
| Q |
101 |
tttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttct |
200 |
Q |
| |
|
|||||| ||||||| |||||| || |||| |||||| ||| |||||| ||||| ||||| || || || ||||||||||||||||||| ||| |
|
|
| T |
39454705 |
tttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaaccttccagaatgctct |
39454804 |
T |
|
| Q |
201 |
cttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactact |
296 |
Q |
| |
|
|||||||||||||| |||||| | || |||||| | |||| ||| |||||||||||||||||||| |||||||| || || ||||||| |||| |
|
|
| T |
39454805 |
cttcccccaaacactaatccag---tttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattact |
39454897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 39460216 - 39460558
Alignment:
| Q |
1 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| |||||| |||||||| | |||||||||| ||| |||||||| || |||||| ||||| |
|
|
| T |
39460216 |
aagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgcctccgaattactgt |
39460315 |
T |
|
| Q |
101 |
tttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttct |
200 |
Q |
| |
|
|||| || ||| ||||| ||| | ||||| ||||| ||||||||||| ||||| | || || |||||| |||||||||||||||||||||||||| |
|
|
| T |
39460316 |
cctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttct |
39460415 |
T |
|
| Q |
201 |
cttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagag |
300 |
Q |
| |
|
||||||||||||| ||| ||| | || |||| ||| ||||||||||||||||| ||||||| |||||||| || || || |||||||||| |
|
|
| T |
39460416 |
cttcccccaaacatcgaaccaact---tccagaatgatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactactacta |
39460512 |
T |
|
| Q |
301 |
aaggacaacatggacacctcgccgccttcgttgttgacatgttctg |
346 |
Q |
| |
|
|| | |||||||| |||| | ||||| ||||||||||||||||| |
|
|
| T |
39460513 |
gagaaaaacatggaaccctcacagcctttgttgttgacatgttctg |
39460558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 39464737 - 39464451
Alignment:
| Q |
1 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||| | | | |||||| |||| | |||||||||| ||||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
39464737 |
aagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtctccgaataaccat |
39464638 |
T |
|
| Q |
101 |
tttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttct |
200 |
Q |
| |
|
||||| |||||| ||||||| | ||||| |||||| ||||||||||| |||| || || || ||||| || ||||||||||||||||||||||| |
|
|
| T |
39464637 |
cttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttct |
39464538 |
T |
|
| Q |
201 |
cttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctc |
290 |
Q |
| |
|
||||||| || | | |||||||||| | || |||| |||||||| || ||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
39464537 |
cttccccaaacctctgatccaggttccgct---atgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctc |
39464451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 39458465 - 39458286
Alignment:
| Q |
33 |
catctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgttttagttatcaaattcccacacataacagaaa |
132 |
Q |
| |
|
|||||| ||||||| || || |||| |||||||||||||| |||||||||||||||||| |||| | || || || ||||| ||||||| |||||||| |
|
|
| T |
39458465 |
catctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaacagaaa |
39458366 |
T |
|
| Q |
133 |
atgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaac |
212 |
Q |
| |
|
|||||| |||||||||||||| | ||| || ||||| ||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
39458365 |
tagatgtctacactaaatcccttgccatcgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaac |
39458286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 39480371 - 39480441
Alignment:
| Q |
33 |
catctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgtttt |
103 |
Q |
| |
|
|||||| ||||||| ||||| || | ||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
39480371 |
catctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctccgaataactgtttt |
39480441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 43312716 - 43312626
Alignment:
| Q |
1 |
aagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccg |
91 |
Q |
| |
|
|||||||||||||||||| ||| ||| || | ||| || | ||||| |||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
43312716 |
aagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccg |
43312626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 39458259 - 39458207
Alignment:
| Q |
242 |
tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcacta |
294 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
39458259 |
tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcacta |
39458207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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