View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11259_high_1 (Length: 798)
Name: NF11259_high_1
Description: NF11259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11259_high_1 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 19 - 783
Target Start/End: Complemental strand, 12971744 - 12970989
Alignment:
| Q |
19 |
ttcaaagcataatgaataccttgcaattgataatgagaacgagaaaccacttctttcatcgaaaaagaaacattgctaaacactttttcatctgtagccc |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12971744 |
ttcaaagcataatgcataccttgcaattgataatgagaacgagaaaccacttctttcatcgaaaaagaaacattgctaaacaccttttcatctgtagccc |
12971645 |
T |
|
| Q |
119 |
ttcataacccttccatagcaaatagaacttaagttccactcctattgttcttcacataacaacctctcatattattaagaagtcaaatttggtcctcatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12971644 |
ttcataacccttccatagcaaatagaacttaagttccactcctattgttcttcacataacaacctcgcatattattaagaagtcaaatttggtcctcatg |
12971545 |
T |
|
| Q |
219 |
caaccaaaaatcactaagaagaacattccaaattatagacctccaaattctagaccccaactaaaatcctcaaagaatgtacactaaagactcaccattt |
318 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12971544 |
caaccaaaaatcactaagaagaacattcccaactatagacctccaaattctagaccccaactaaaatcctcaaagaatgtacagtaaagactcaccattt |
12971445 |
T |
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| Q |
319 |
caaccacacaatggatatctcaattcaagtgccgtgcccttatgagctcgccgatcagtagtaaaaagacatccctgagctaagactcaacattgtttct |
418 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12971444 |
caaccacacaatggatatttcaattcaagtgtcgtgcccttatgagctcgccgatcagtagtaaaaagacatccctgagctaagactcagcattgtttct |
12971345 |
T |
|
| Q |
419 |
ccatctactccactgagtatatcataagcaaaccgagatgaaaaattccctcatcatttgctttacgccaaaaaagaatatcatccctgttagcattggt |
518 |
Q |
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| T |
12971344 |
ccatctactccactgagtatatcataagcaaaccgagatgaaaaattccctcattatttgctttacgccaaaaaagaatatcatccctgttagcattggt |
12971245 |
T |
|
| Q |
519 |
tgaagatgccaacgttccaaccctgtcaaagatattgtaagacacaatgatatccaaatcattcaggtcccaataattattcacattaacatagcttcta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12971244 |
tgaagatgccaacgttccaaccctgtcaaagatattgtaagacacaatgatatccaaatcattcaggtcccaataattattcacattaacatagcttcta |
12971145 |
T |
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| Q |
619 |
accggcttggcgagctcattagcaagacttattcaattagtttttaagtgtctggtatcttaagagtccttcctaccaaaaattaatttgtaaaccattt |
718 |
Q |
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| T |
12971144 |
accggcttggcgagctcattagcaagacttattcaatgagttttttagtgtctggtatct---------ttcctaccaaaaattaatttgtaaaccattt |
12971054 |
T |
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| Q |
719 |
ccaattcttcatatccatgattcccatgtaacagattccatgactcatggcttcatcacctccat |
783 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12971053 |
ccaattcttcatatccatgattcccatgtaacagattccatgactcatggcttcatcacctccat |
12970989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 32082 - 32027
Alignment:
| Q |
19 |
ttcaaagcataatgaataccttgcaattgataatgagaacgagaaaccacttcttt |
74 |
Q |
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||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
32082 |
ttcaaagcatactgaataccttgcaattgagattgagaaccagaaaccacttcttt |
32027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 49043479 - 49043534
Alignment:
| Q |
19 |
ttcaaagcataatgaataccttgcaattgataatgagaacgagaaaccacttcttt |
74 |
Q |
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||||||||||| |||||| ||||||||||| | ||||||| | ||||||||||||| |
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| T |
49043479 |
ttcaaagcatactgaatatcttgcaattgagattgagaaccataaaccacttcttt |
49043534 |
T |
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