View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11259_high_3 (Length: 518)
Name: NF11259_high_3
Description: NF11259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11259_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 150 - 501
Target Start/End: Complemental strand, 45795106 - 45794755
Alignment:
| Q |
150 |
cacacataacaacatttgattttgactcttgtgaaatgcagtggtaaagggcaaaagattcatctgcaaagatatgggtttcacagctccagctagcgta |
249 |
Q |
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| T |
45795106 |
cacatataacaacatttgattttcactcttgtgaaatgcagtggtaaagggcaaaagattcatctgcaaagatatgggtttcacagctccagctagcgta |
45795007 |
T |
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| Q |
250 |
ccaggagcatcagcactccttgtactttctgatcatgcagcattcttcaactgcaaaattgacggcggagaaggaagcttatacgcagtcgcgcagcgcc |
349 |
Q |
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| T |
45795006 |
ccaggagcatcagcactccttgtactttctgatcatgcagcattcttcagctgcaaaattgacggcggagaaggaagcttatacgcagtcgcgcagcgcc |
45794907 |
T |
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| Q |
350 |
aattctacagagactgcgaaattcatggtagtgtagacatcatcaaaggagactcagcaactataattcaaaactcgcaaataattgtgaagcatcgaaa |
449 |
Q |
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| T |
45794906 |
aattctacagagactgcgaaattcatggtagtgtagacatcatcaaaggagactcagcaactataattcaaaactcgcaaataattgtgaagcaccgaaa |
45794807 |
T |
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| Q |
450 |
ttcttctagcttagctctgagaaaaaatgtggtgagtgttcaatcaagacta |
501 |
Q |
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| T |
45794806 |
ttcttctagcttagctctgagaaaaaatgtggtgagtgttcaatcaagacta |
45794755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 45795203 - 45795098
Alignment:
| Q |
11 |
cagagactaaagaagataatcatctttatcaataataagaattagttttacagggactaaaataaaaacattaatatctaccgagtactaaaaacaacac |
110 |
Q |
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| T |
45795203 |
cagagactaaagaagataatcatctttattaataataagaattagttttacagggactaaaataaaaacattaatatctaccgagtactaaaaacaacac |
45795104 |
T |
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| Q |
111 |
atataa |
116 |
Q |
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|||||| |
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| T |
45795103 |
atataa |
45795098 |
T |
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