View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11259_low_2 (Length: 783)
Name: NF11259_low_2
Description: NF11259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11259_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 241 - 575
Target Start/End: Original strand, 28738822 - 28739163
Alignment:
| Q |
241 |
gtaatggtgtttgtagtgagcaagggaaaagagaattccaatggttacaaatgcattagtgatgtgacaaatgatgaaataatcggtagatagttgtta- |
339 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28738822 |
gtaatggtgtttgcagtgagcaagggaaaagagaattccaatggttacaaatgcattagtaatgtgacaaatgatgaaataatcggtagatagttgttat |
28738921 |
T |
|
| Q |
340 |
-atagcacaaaacaatctgtagatgaaataaaagaaataattgtgctgagtgtaacaccaaaacgctctcaaattgctgatgtcaaaagtttggccgaaa |
438 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28738922 |
aatagcacaaaacaacctgtagatgaaataaaagaaataattgtgctgagtgtaacaccaaaacgctctcaaattgctcatgtcaaaagtttggccgaaa |
28739021 |
T |
|
| Q |
439 |
ttttgcaaaactttgctaaagaaaaagatctgtaagagaaagaacatagagttgcaaagaatcc-----actaaaaatcatagtttcaggaaattgtttt |
533 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28739022 |
ttttgcaaaactttgctaaagaaaaagatttgtaagagagagaacacagagttgcaaagaatccactaaactaaaaatcatagtttcaggaaattgtttt |
28739121 |
T |
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| Q |
534 |
caactaaaggacacactactcccattgttgcaaccaaaacac |
575 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28739122 |
caactaaaggacacactactcccattattgcaaccaaaacac |
28739163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 241 - 637
Target Start/End: Original strand, 28718511 - 28718908
Alignment:
| Q |
241 |
gtaatggtgtttgtagtgagcaagggaaaagagaattccaatggttacaaatgcattagtgatgtgacaaatgatgaaataatcggtagatagttgttaa |
340 |
Q |
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||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
28718511 |
gtaatggtgtttgcagtgagcaattgaaaagagaattctaatggctacaaatgcatcagtgatgtgaccaatgatgaaataatcggtagacagttgttaa |
28718610 |
T |
|
| Q |
341 |
tagcacaaaacaatctgtagatgaaataaaagaaataattgtgctgagtgtaacaccaaaacgctctcaaattgctgatgtcaaaagtttggccgaaatt |
440 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| || |||| ||||||||||||||||||| ||||||| |
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| T |
28718611 |
tagcacaaaacaatctgtagatgaaataaacgaaataattgtgccgagcgtaacaccaaaacgttcacaaaatgctgatgtcaaaagtttgtacgaaatt |
28718710 |
T |
|
| Q |
441 |
ttgcaaaactttgctaaagaaaaagatctgtaagagaaagaacataga-gttgcaaagaatccactaaaaatcatagtttcaggaaattgttttcaacta |
539 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| | | |||||||||||| |||||||| |
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| T |
28718711 |
ttgcaaaaatttgctaaagaaaaagattcgtaagagaaagaacatagaggttgcaaagaatctactaaaaatcacaatgtcaggaaattgtattcaacta |
28718810 |
T |
|
| Q |
540 |
aaggacacactactcccattgttgcaaccaaaacacccttaggttacaacataatgccctcgaatggaaaggaatctcattcaaaattaattgaagct |
637 |
Q |
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||| | | ||||||||| ||||| ||||||||||||||||||||||||||||||| |||| | |||||||||||| | |||||||||||||||||| |
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| T |
28718811 |
aagtataaactactcccgttgtttcaaccaaaacacccttaggttacaacataatatcctcagaaggaaaggaatctgactcaaaattaattgaagct |
28718908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 28742319 - 28742548
Alignment:
| Q |
18 |
gttgcaggaaatacacatagcaatatagtaagagagaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaat |
117 |
Q |
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||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
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| T |
28742319 |
gttgcaggaaatagacattgcaaaatagtaatagagaacttgcctgcagaacatcaccaatattaataacaagagcctcaggtattggtggtacatcaat |
28742418 |
T |
|
| Q |
118 |
ccacttttccttgtgaagaacttgaaggccaccaaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaa |
217 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28742419 |
ccactttcccttgtgaagaacttgaaggccaccaatatggtcttgaagaagcactgtgaggaaactactatcagaatgtttggcggttcccatcgttaaa |
28742518 |
T |
|
| Q |
218 |
tctagttcaggacaagcaggatagtaatgg |
247 |
Q |
| |
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| | |||||||||||||||||||||||||| |
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| T |
28742519 |
tgtggttcaggacaagcaggatagtaatgg |
28742548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 28735269 - 28735465
Alignment:
| Q |
50 |
agagaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccac |
149 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| | || |||||||||||| |||| |
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| T |
28735269 |
agagaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccac |
28735368 |
T |
|
| Q |
150 |
caaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaagcaggatagtaatg |
246 |
Q |
| |
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||| ||||||||| |||||| | ||| ||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
28735369 |
caatatggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg |
28735465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 28700265 - 28700464
Alignment:
| Q |
50 |
agagaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccac |
149 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| |||||||| |||| ||||||||||| |||||||| || | |||||||||||||||||||| |
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| T |
28700265 |
agagaacttgcctgcagaagatcaccgatattaacaacaagagccccgggtaccggtggtacatcgatccacttgtcttggtgaagaacttgaaggccac |
28700364 |
T |
|
| Q |
150 |
caa-aat--ggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaagcaggatagtaatg |
246 |
Q |
| |
|
||| ||| ||||||| |||||| | ||| |||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
28700365 |
caataatacggtcttggagaagcactgtgagaaaactaacatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg |
28700464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 28783337 - 28783534
Alignment:
| Q |
52 |
agaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccacca |
151 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||| ||||||| | ||||||||| |||| |||||||||||| | || ||||| |||||| ||||||||| |
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|
| T |
28783337 |
agaacttgcctgtagaagatcaccaacattaacaacaagagcatcaggtattggaggtatatcaatccacttgttctggtgaaaaacttggaggccacca |
28783436 |
T |
|
| Q |
152 |
aaatg---gtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaagcaggatagtaatg |
246 |
Q |
| |
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| ||| |||||||||||| | ||| |||| ||||||||||||||| | ||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
28783437 |
atatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg |
28783534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 16414496 - 16414607
Alignment:
| Q |
58 |
tgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccaccaaaatgg |
157 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||| ||| || || ||||||||||||||| | ||| |||||||| |||||||||||| | ||| |
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| T |
16414496 |
tgcctgcagaaaatcgccaatattaacgattagagcctcaggcataggaggtacatcaatccacatgtccctgtgaagatattgaaggccacctacatga |
16414595 |
T |
|
| Q |
158 |
tcttgaagaagc |
169 |
Q |
| |
|
||||| |||||| |
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|
| T |
16414596 |
tcttgtagaagc |
16414607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 10768639 - 10768505
Alignment:
| Q |
112 |
atcaatccacttttccttgtgaagaacttgaaggccaccaaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatc |
211 |
Q |
| |
|
||||||||| || |||| | ||||||||| |||||||||| ||||||||| |||||| | ||||||| | |||||||||| |||| ||||||| |
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| T |
10768639 |
atcaatccatttatcctgataaagaacttggaggccaccaatatggtcttggagaagcacagtgaggaaatcattatcagaatgcttggttgttcccaca |
10768540 |
T |
|
| Q |
212 |
gttaaatctagttcaggacaagcaggatagtaatg |
246 |
Q |
| |
|
|| || ||| |||||||||||| |||||| ||||| |
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|
| T |
10768539 |
gtcaattctggttcaggacaaggaggataataatg |
10768505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 36467601 - 36467676
Alignment:
| Q |
241 |
gtaatggtgtttgtagtgagcaagggaaaagagaattccaatggttacaaatgcattagtgatgtgacaaatgatga |
317 |
Q |
| |
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||||||||||||| | |||||||||||||| |||| | |||||||||||||||| | |||||||||| ||||||| |
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| T |
36467601 |
gtaatggtgtttgcaatgagcaagggaaaa-agaactttgatggttacaaatgcatcaatgatgtgacagatgatga |
36467676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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