View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11259_low_8 (Length: 255)
Name: NF11259_low_8
Description: NF11259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11259_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 29711351 - 29711601
Alignment:
| Q |
1 |
catttataacagtactggaacaaataaacatacatataatgtagtatttcacatatttctcagatgtttgtgagatttgcagtgtcatctatcgttgttg |
100 |
Q |
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| T |
29711351 |
catttataacagtactggaacaaataaacatacatataatgtagtatttcacatatttctcagatgtttgtgagatttgcagtgtcatctatcgttgttg |
29711450 |
T |
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| Q |
101 |
catgaaatggtaacctcggtcgttatcagttatatccggtttcaaaaggttgtgtgaaattgttattatacctgtttttccaactagtttggcaaagtat |
200 |
Q |
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| T |
29711451 |
catgaaatggtaacctcggtcattatcagttatatccggtttcaaaagattgtgtgaaattgttattatacccgtttttccaa----tttggcaaagtat |
29711546 |
T |
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| Q |
201 |
gtattactctgactgatttggtctttgattaatgaaatgagaatgggattttgat |
255 |
Q |
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| T |
29711547 |
gtattactgtgacttatttggtctttgattaatgaaatgagaatgggattttgat |
29711601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 255
Target Start/End: Complemental strand, 29697418 - 29697238
Alignment:
| Q |
70 |
gtgagatttgcagtgtcatctatcgttgttgcatgaaatggtaacctcggtcgttatcagttatatccggtttcaaaaggttgtgtgaaattgttattat |
169 |
Q |
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| T |
29697418 |
gtgagatttacagtgtcgtctattgttgtctcatgaaatggtaacctcgataatcaccgtttatatccggtttcaaaaggttgtgtgaaattgttattgt |
29697319 |
T |
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| Q |
170 |
acctgtttttccaactagtttggcaaagtatgtattactctgactgatttggtctttgattaatgaaatgagaatgggattttgat |
255 |
Q |
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| T |
29697318 |
acccg-ttttcctactaatttggtaggatgtgtattact----ctgagttggtctttgatttatgaaatgagaatgagattttgat |
29697238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 29689320 - 29689171
Alignment:
| Q |
6 |
ataacagtactggaacaaataaacatacata-taatgtagtatttcacatatttctcagatgtttgtgagatttgcagtgtcatctatcgttgttgcatg |
104 |
Q |
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| T |
29689320 |
ataacagtaatcaaacaaataaacaaacataatactg-agtatttcacaggtttcacatatgatagtgagatttgcagtgtcgtctattgttgtctcatg |
29689222 |
T |
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| Q |
105 |
aaatggtaacctcggtcgttatcagttatatccggtttcaaaaggttgtgt |
155 |
Q |
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| T |
29689221 |
aaatggtaacctcgataatcaccggttatatccggtttcaaaaggttgtgt |
29689171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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