View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11259_low_9 (Length: 239)
Name: NF11259_low_9
Description: NF11259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11259_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33904355 - 33904131
Alignment:
| Q |
1 |
tcattctcttcacatcaaaatcaatttgggattgacatttgcattcctg---tagatggccaatttgttcccacaaaaacagtttggatttcacctatat |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
33904355 |
tcattctcttcacatcaaaatcaatttgggattgacatttgcattcgtgatgtagatgaccaatttgttcccacaaaaacagtttggatttcgcctatac |
33904256 |
T |
|
| Q |
98 |
gtagtgtagatataagggaagccttggccttctacatgcaatcacttgggttcttgaattgcatctgagatcattggactttacactaagccaaaaaagt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33904255 |
gtagtgtagatataagggaagccttggccttctacatgcaatcacttgggttcttgaattgcatctgagaccattggactttacactaagccaaaaaagt |
33904156 |
T |
|
| Q |
198 |
ggttgatcttaatagtgataagaac |
222 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
33904155 |
ggttgatcttaatagtgataagaac |
33904131 |
T |
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