View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_high_18 (Length: 480)
Name: NF1125_high_18
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 28089389 - 28088946
Alignment:
| Q |
8 |
tgagatgaaatacataagtgatacttcagatttatttctcatcaaaactcagctttctttaaatgacaataatagtaattagtagttgttagtaattatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28089389 |
tgagatgaaatacataagtgatacttcagatttatttctcatcaaaactcagctttctttaaatgacaataacagtaattagtagttgttagtaattatt |
28089290 |
T |
|
| Q |
108 |
tcttataggaaccaaaagctgagaagcctggttactagaaactagaaatcgagcctcgataattaatcggctgcaagggcaattgtatcaatattaaatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28089289 |
tcttataggaaccaaaagctgagaagcctggttactagaaactagaaatcgagcctcgataattaattggctgcaagggcaattgtatcaatattaaatc |
28089190 |
T |
|
| Q |
208 |
atagaatttcataccgcccaaggtagtatctatactgccgacctacaccaggagttattcggccagataagtccttagtcgataagaaggttgcctctat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28089189 |
atagaatttcataccgcccaaggtagtatctatactgccgacctacaccaggagttattcggccagataagtccttagtcgataagaaggttgcctctat |
28089090 |
T |
|
| Q |
308 |
acgatctttatgcaactgcacattacttttcatatcctcccaaaactcatcggcaaatgattgatcagcagcatcatcagcaccctttatttcatgattt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28089089 |
acgatctttatgcaactgcacattacttttcatatcctcccaaaactcatcggcaaatgattgatcagcagcatcatcagcaccctttatttcatgattt |
28088990 |
T |
|
| Q |
408 |
acagttgaggaagacgaagcagaaatttcattagcataatgaag |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28088989 |
acagttgaggaagacgaagcagaaatttcattagcataatgaag |
28088946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University