View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_high_23 (Length: 463)
Name: NF1125_high_23
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 49562490 - 49562842
Alignment:
| Q |
10 |
aataatatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagccttttctctatact |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49562490 |
aataaaatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagataccggataactgaagcccttggactaagccttttctctatact |
49562589 |
T |
|
| Q |
110 |
aagtccgaaaagctctggtgctgccaggagcaataaaggatcccaaccaagttgttggatccaaaaacgcatcactgcattgagtttgtccaaagaccgt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49562590 |
aagtccgaaaagctctggtgctgccaggagcaataaaggatcccaaccaagttgttggatccaaaaacgcatcaccgcattgagtttgtccaaagaccgt |
49562689 |
T |
|
| Q |
210 |
agcataaggttagggcctcttttaaatgcagttaaaattgcatcttcagaataaccccagctcttcaaggcatcgactttggcatcccattgggatttag |
309 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49562690 |
agcataaggttaggccctcttttaaatgcagttaaaattgcatcttcagaataaccccagctcttcaaggcatcgactttggaatcccattgggatttag |
49562789 |
T |
|
| Q |
310 |
tgatagcctttttggccaacaatgcgacacaaaaattgtaactagaaggatga |
362 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49562790 |
tgatggcctttttggccaacaatgcgacacaaaaattgtaactagaaggatga |
49562842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 26 - 349
Target Start/End: Complemental strand, 49904924 - 49904601
Alignment:
| Q |
26 |
taagctagcatccttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagccttttctctatactaagtccgaaaagctct |
125 |
Q |
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|||||||||| ||| ||||||||||||||||| ||||||||| || || || |||||||||||||||||||||| |||||| ||| |||||| |
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| T |
49904924 |
taagctagcaccctctttcatcaaacctttggatagaagatacttgacaattgatgcccttggactaagccttttctgtatactgtatccaaaaagcgtc |
49904825 |
T |
|
| Q |
126 |
ggtgctgccaggagcaataaaggatcccaaccaagttgttggatccaaaaacgcatcactgcattgagtttgtccaaagaccgtagcataaggttagggc |
225 |
Q |
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|| | || | ||||| |||||||||||||||| | | || |||||||| |||||||||||||||||| || ||||| |||||||| ||| ||| |
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| T |
49904824 |
ggctcagctaagagcagcgaaggatcccaaccaagctcctcgacccaaaaactcatcactgcattgagtttatctggagaccttagcataaagtt-gggt |
49904726 |
T |
|
| Q |
226 |
ctcttt-taaatgcagttaaaattgcatcttcagaataaccccagctcttcaaggcatcgactttggcatcccattgggatttagtgatagcctttttgg |
324 |
Q |
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||| |||||||| | |||| ||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||| |||| |||| |||||| |
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| T |
49904725 |
tgcttcctaaatgcattaaaaactgcatcttcagaacaaccccaactcttcaagacatcaactttggcatcccattgggatttggtgacagcccttttgg |
49904626 |
T |
|
| Q |
325 |
ccaacaatgcgacacaaaaattgta |
349 |
Q |
| |
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|||| ||||| |||||||||||||| |
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|
| T |
49904625 |
ccaataatgctacacaaaaattgta |
49904601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 49571338 - 49571432
Alignment:
| Q |
10 |
aataatatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagccttttctct |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
49571338 |
aataaaatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagatactggataacagaagcccttggactaagccttttctct |
49571432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 49905580 - 49905402
Alignment:
| Q |
38 |
cttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagccttttctctatactaagtccgaaaagctctggtgctgccagg |
137 |
Q |
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|||||||||||||||||| || ||||||||||||||||| | |||||||||| ||||||||||||||| ||||| |||| ||| ||||| ||| || | |
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| T |
49905580 |
cttcttcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaaatatctggagctttcaag |
49905481 |
T |
|
| Q |
138 |
agcaataaaggatcccaaccaagttgttggatccaaaaacgcatcactgcattgagtttgtccaaagaccgtagcataa |
216 |
Q |
| |
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|||| ||||||||||||||| | |||| |||||||||| ||||||| ||||||| ||||||| |||||||||||||| |
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|
| T |
49905480 |
agcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcaccgcattgaatttgtccctagaccgtagcataa |
49905402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 26 - 349
Target Start/End: Original strand, 49558344 - 49558666
Alignment:
| Q |
26 |
taagctagcatccttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagccttttctctatactaagtccgaaaagctct |
125 |
Q |
| |
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|||||||| | |||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||| || |||| || |
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| T |
49558344 |
taagctagaacccttcttcatcaaacctttggatagaagatacttgataactgaagcccttggaataagccttttctctatactatacccaaaaattgct |
49558443 |
T |
|
| Q |
126 |
ggtgctgccaggagcaataaaggatcccaaccaagttgttggatccaaaaacgcatcactgcattgagtttgtccaaagaccgtagcataaggttagggc |
225 |
Q |
| |
|
||| | | | ||||| ||||||||||| ||||| | | || |||||| | |||||||| |||||||||||| |||||||| ||||| ||| ||| |
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| T |
49558444 |
ggttcagttaagagcagcaaaggatcccacccaagctcatcgacccaaaatctcatcactg-attgagtttgtctggagaccgtaacataaagtt-gggt |
49558541 |
T |
|
| Q |
226 |
ctctt-ttaaatgcagttaaaattgcatcttcagaataaccccagctcttcaaggcatcgactttggcatcccattgggatttagtgatagcctttttgg |
324 |
Q |
| |
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||| |||||||| | ||||| ||||||||||| ||||||| ||||||||| |||| | ||| |||||||| |||||||| |||| |||| |||||| |
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| T |
49558542 |
tgcttcctaaatgcattaaaaatatcatcttcagaacaaccccaactcttcaagacatcaaatttagcatcccactgggatttggtgacagcccttttgg |
49558641 |
T |
|
| Q |
325 |
ccaacaatgcgacacaaaaattgta |
349 |
Q |
| |
|
|||| ||||| |||||||| ||||| |
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| T |
49558642 |
ccaataatgctacacaaaagttgta |
49558666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 9421327 - 9421406
Alignment:
| Q |
270 |
ctcttcaaggcatcgactttggcatcccattgggatttagtgatagcctttttggccaacaatgcgacacaaaaattgta |
349 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| | ||||| |||||||||||||| |
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| T |
9421327 |
ctcttcaaggcatcaactttggcatcccattgggatttggtgatagcccttttgtcgggtaatgccacacaaaaattgta |
9421406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 9441372 - 9441452
Alignment:
| Q |
270 |
ctcttcaaggcatcgactttggcatcccattgggatttagtgatagcctttttggccaacaatgcgacacaaaaattgtaa |
350 |
Q |
| |
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|||||| ||||||| |||||||| |||||||||||||| | ||||||| |||||||| ||||| ||||||||||||||| |
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|
| T |
9441372 |
ctcttcgaggcatcaactttggcgtcccattgggatttggagatagcccttttggccggtaatgccacacaaaaattgtaa |
9441452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 5669687 - 5669574
Alignment:
| Q |
70 |
ggataaccgaagcccttggactaagccttttctctatactaagtccgaaaagctctggtgctgccaggagcaataaaggatcccaaccaagttgttggat |
169 |
Q |
| |
|
||||||| |||||||||||| | | ||| ||||| || || | || |||||| || |||||| ||||||| |||||||| |||||||||||||| || |
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|
| T |
5669687 |
ggataacagaagcccttggaattaacctattctcaatgctgaatctgaaaagatccggtgcttaaaggagcactaaaggattccaaccaagttgttctat |
5669588 |
T |
|
| Q |
170 |
ccaaaaacgcatca |
183 |
Q |
| |
|
||||||||| |||| |
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|
| T |
5669587 |
ccaaaaacgtatca |
5669574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 5693358 - 5693245
Alignment:
| Q |
70 |
ggataaccgaagcccttggactaagccttttctctatactaagtccgaaaagctctggtgctgccaggagcaataaaggatcccaaccaagttgttggat |
169 |
Q |
| |
|
||||||| |||||||||||| | | ||| ||||| || || | || |||||| || |||||| ||||||| |||||||| |||||||||||||| || |
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| T |
5693358 |
ggataacagaagcccttggaattaacctattctcaatgctgaatctgaaaagatccggtgcttaaaggagcactaaaggattccaaccaagttgttctat |
5693259 |
T |
|
| Q |
170 |
ccaaaaacgcatca |
183 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
5693258 |
ccaaaaacgtatca |
5693245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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