View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_high_27 (Length: 450)
Name: NF1125_high_27
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 424
Target Start/End: Complemental strand, 14443613 - 14443204
Alignment:
| Q |
15 |
ggcaaaataaataaaaataaaccaaacaccaatcaagagtgatagtgagacacaaaatatggtggttgctactactaatggttcgtctcctttctcaccc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
14443613 |
ggcaaaataaataaaaataaaccaaacaccaatcaagagtgatagtgagacacaaaatatggtggttgctactactaatgtttcttctcctttctcaccc |
14443514 |
T |
|
| Q |
115 |
aatggcacnnnnnnntccctctccactttctcacccaattcctttgtcaatgttgaaaagtaaattatctttcttttttatatcaagtcattttattctc |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14443513 |
aatggcacaaaaaaatccctctccactttctcacccaattcctttgtcaatgttgaaaagtaaattatctttcttttttatatcaagtcattttattctc |
14443414 |
T |
|
| Q |
215 |
ctaaactttttatatcaagtcattttcactcaaaaactctttacatatatattaattaaactcttaatattattattttttaacaggggtgacccggtgg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14443413 |
ctaaactttttatatcaagtcattttcactcaaaaactctttacatatatattaattaaactcttaatattattattttttaacaggggtgacccggtgg |
14443314 |
T |
|
| Q |
315 |
catttaggtcatattgggagaaggtgagtgataaaagtagtgtggagatcaaaggagaagaatttatgagttactttggtgatggtaacaacttatgttg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14443313 |
catttaggtcatattgggagaaggtgagtgataaaagtagtgtggagatcaaaggagaagaatttatgagttactttggtgatggtaacaacttatgttg |
14443214 |
T |
|
| Q |
415 |
gtatatgttg |
424 |
Q |
| |
|
|||||||||| |
|
|
| T |
14443213 |
gtatatgttg |
14443204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University