View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_high_28 (Length: 446)
Name: NF1125_high_28
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_28 |
 | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 64 - 292
Target Start/End: Original strand, 37602064 - 37602289
Alignment:
| Q |
64 |
ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca |
163 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
|
|
| T |
37602064 |
ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatgc-atcaaatccactactttacg |
37602162 |
T |
|
| Q |
164 |
atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatggttatgtgactattatcatgcc |
263 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37602163 |
gtccaaatgtaacgtgtcatattggagcttttt--acaaatctgcaaattgtacttcaaatctaatgcatggcctatggttacgtgactattgtcatgcc |
37602260 |
T |
|
| Q |
264 |
atcaagtgatcaaatctttttcagataga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37602261 |
atcaagtgatcaaatctttttcagataga |
37602289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 46558927 - 46558702
Alignment:
| Q |
64 |
ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca |
163 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
|
|
| T |
46558927 |
ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatgc-atcaaatccactactttacg |
46558829 |
T |
|
| Q |
164 |
atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatggttatgtgactattatcatgcc |
263 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
46558828 |
gtccaaatgtaacgtgtcatattggagcttttt--acaaatctgcaaattgtacttcaaatctaatgcatggcctatggttacgtgactattgtcatgcc |
46558731 |
T |
|
| Q |
264 |
atcaagtgatcaaatctttttcagataga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46558730 |
atcaagtgatcaaatctttttcagataga |
46558702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
| Q |
60 |
cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact |
158 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
22778625 |
cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact |
22778723 |
T |
|
| Q |
159 |
ttaca |
163 |
Q |
| |
|
||||| |
|
|
| T |
22778724 |
ttaca |
22778728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 22778747 - 22778825
Alignment:
| Q |
215 |
tacttcaaatccaatgcatggcctatggttatgtgactattatcatgccatcaagtgatc-aaatctttttcagataga |
292 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22778747 |
tacttcaaatcaaatgcatggcctatggctatgtgactatcgtcatgccatcaagtgatcaaaatctttttcagataga |
22778825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 16865 - 16829
Alignment:
| Q |
329 |
ctagactcaattaaataattcgaaacggacattacac |
365 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |
|
|
| T |
16865 |
ctagactcaattaaataattcgaaacgggcgttacac |
16829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University